Shrish Tiwari wrote:
Is there a way using EMBOSS programs to extract 2kb region around the 
transcription start site. When I use
extractfeat -type mrna -before 1000 -after 1000
I get 2kb regions around every splice site apart from what I need. Any 
suggestions?

Try adding the parameter -join

        Regards,
        Guy Bottu,
        Belgian
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