Guy Bottu wrote:
Dear friends,As you know, the databanks EMBL, GenBank and RefSeq contain entries that do not contain the sequence itself, but instead "join" information about how to compose the sequence using ranges from other sequences. When the databank has been installed under EMBOSS the sequence is not available, since EMBOSS wil give a "Warning: Sequence has zero length". Do you think that EMBOSS should be able to handle such cases ? And in the meantime, do you know about tools that can, given as input the "CON" sequence and a databank with sequences, assemble on-the-fly the sequence ?
Yes we need to handle those entries. If you want to request this feature, please tell us. More requests means higher priority :-)
When reading a CON entry we need a database to use to read the true sequence and features.
If we are reading from a database we can add the information in the database definition.
How do we define a default to resolve EMBL CON entries? Can we handle EMBL release and EMBL updates? regards, Peter _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
