Hi Shrish As a starting point, you could have a look at getorf: http://emboss.sourceforge.net/apps/cvs/emboss/apps/getorf.html
which will (optionally) return regions flanking START and / or STOP codons. If you know an exact region of interest that can be specified with -sbegin and -send for any input sequence. Cheers Jon > Hi! > Does anyone know how to find genes in sequences flanking a region of > interest? Most programs require the length of > flanks to scan. We are interested in the nearest genes on either side, and > maybe the distance of the gene to our > region of interest. > Shrish > Dr. Shrish Tiwari > E503, Centre for Cellular and Molecular Biology > Uppal Road, Hyderabad - 500 007, INDIA > Phone: 91-40-27192777 > Alternate email: [EMAIL PROTECTED] > > _______________________________________________ > EMBOSS mailing list > [email protected] > http://lists.open-bio.org/mailman/listinfo/emboss > _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
