Hello A while ago I sent a message asking for help. Someone guided me (I thank him a lot) but I am still struggling with the installation of Emboss Explorer. I have seeked for documentation but could not find any. I am using this forum since I do not know where else to apply. I wish this is OK.
Here is my first question. "index.html" file in my Emboss web directory contains the following: <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Frameset//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-frameset.dtd";> <html xmlns='http://www.w3.org/1999/xhtml' xml:lang='en' lang='en'> <head> <title>EMBOSS Explorer</title> </head> <frameset cols="170, *"> <frame src="/cgi-bin/emboss/menu" name="menu" /> <frame src="/cgi-bin/emboss/intro" name="main" /> </frameset> </html> in my "cgi-bin" I only have "emboss" as a perl program after the installation. How could that work? Of course if I rename emboss by, let's say intro (as in the index.html), it does work. But I have three frames. What am I missing? My second question I want to change the default output for "emma". For this I have put "SET emboss_OUTFORMAT clustal" in my "emboss.default" file. This work perfectly when I use "emma" at the command line. But it has no effect in the EmbossExplorer Interface. Is there a way to correct that? Thank you in advance for the help. It will be appreciate very much. Johanne Duhaime [EMAIL PROTECTED]<mailto:[EMAIL PROTECTED]> _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
