Dear Jay, Are you simply trying to extract specific sequences from a Fasta-format file? The EMBOSS program to do it is seqret, or maybe seqretsplit:
http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/seqret.html http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/seqretsplit.html As Peter Rice suggests, you can do stuff to speed the access up, but it'll work without that. Best regards, Daniel -- Daniel Barker http://bio.st-andrews.ac.uk/staff/db60.htm The University of St Andrews is a charity registered in Scotland : No SC013532 ------------------------------------------------------------------ University of St Andrews Webmail: https://webmail.st-andrews.ac.uk _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
