Charles Plessy wrote:
Le Tue, Aug 05, 2008 at 11:50:51AM +0200, Peter Robinson a écrit :
I have tried to install EMBOSS 6.0 and got through ./configure, make,
make install without error messages. However, when I try to start an
emboss program, I get the following error:
error while loading shared libraries: libnucleus.so.6: cannot open
shared object file: No such file or directory
I am running debian 4.0 & couldnt find any reference to this in google
or the online docs. Any hints greatly appreciated!
Hello Peter,
There are now Debian EMBOSS packages version 6.0.1 that can solve your
problem:
http://packages.debian.org/source/experimental/emboss
(The Jaspar patch sent earlier on this list is not yet applied, but will
be soon after it is posted on the EMBOSS FTP site).
Otherwise, you may collect a few more informations to better understand
your problem, with the following commands:
- which seqret
- ldd $(which seqret) | grep nucleus
- ls -l $(ldd $(which seqret) | grep nucleus | cut -f3 -d' ')
Have a nice day,
Hi Charles,
I want to use the emboss-ized PHYLIP programs, which do not seem to be
in the debian package (the 5.0 package that is in testing). I figured
out what the problem is and am posting it here in case anybody else runs
across the same problem.
1) The output of ldd $(which seqret) was:
[EMAIL PROTECTED]:~$ which seqret
/usr/local/bin/seqret
[EMAIL PROTECTED]:~$ seqret
seqret: error while loading shared libraries: libnucleus.so.6: cannot
open shared object file: No such file or directory
[EMAIL PROTECTED]:~$ ldd $(which seqret)
linux-gate.so.1 => (0xb7efc000)
libnucleus.so.6 => not found
libajaxg.so.6 => not found
libajax.so.6 => not found
libeplplot.so.3 => not found
libX11.so.6 => /usr/lib/libX11.so.6 (0xb7deb000)
libm.so.6 => /lib/i686/cmov/libm.so.6 (0xb7dc5000)
libc.so.6 => /lib/i686/cmov/libc.so.6 (0xb7c6a000)
libxcb-xlib.so.0 => /usr/lib/libxcb-xlib.so.0 (0xb7c67000)
libxcb.so.1 => /usr/lib/libxcb.so.1 (0xb7c4f000)
libdl.so.2 => /lib/i686/cmov/libdl.so.2 (0xb7c4b000)
/lib/ld-linux.so.2 (0xb7efd000)
libXau.so.6 => /usr/lib/libXau.so.6 (0xb7c48000)
libXdmcp.so.6 => /usr/lib/libXdmcp.so.6 (0xb7c43000)
2) I therefore was missing the shared library for plplot, which had
apparently prevented the nucleus and ajax libraries from being properly
installed. I installed the libplplot-dev debian package and went through
configure-make-make install for EMBOSS-6.0.1 and PHYLIP and now
everything works.
-thanks, Peter
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