OK thanks. Guess I've found an excuse to upgrade at last... Cheers
Simon. > -----Original Message----- > From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] > Sent: 08 September 2008 11:18 > To: simon andrews (BI) > Cc: [EMAIL PROTECTED] > Subject: Re: [EMBOSS] Illegal character warnings in uniprot > > Hi Simon, > > EMBOSS 6.0.1 no longer replaces pyrrolysine with a gap > (neither did a fully patched 5.0.0 AFAIR). > Thanks to Isabelle for the memory jog/hint. > > Alan > > > > Our regular update of uniprot threw up some warnings when > we updated > > over the weekend. It's not clear from the error which line in the > > entry is problematic, but it doesn't seem to have caused any major > > problems and I can still retrieve and query the sequences from the > > indices created. > > > > We're still on EMBOSS v4 (I know I should update - but it works for > > what we use it for!). Is this something which is fixed in later > > versions or is it something new in uniprot itself? > > > > I'll paste in a couple of the 174 warnings I got. > > > > Cheers > > > > Simon. > > > > [formatdb] WARNING: Sequence number 176991 (lcl|MTBB1_METBF), 1 > > illegal character was removed: > > 1 - > > > > [formatdb] WARNING: Sequence number 176992 (lcl|MTBB1_METMA), 1 > > illegal character was removed: > > 1 - > > > > [formatdb] WARNING: Sequence number 176993 (lcl|MTBB2_METAC), 1 > > illegal character was removed: > > 1 - > > > > _______________________________________________ > > EMBOSS mailing list > > [email protected] > > http://lists.open-bio.org/mailman/listinfo/emboss > > > > > _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
