Dear Oliver, Oliver Wafzig wrote:
Using the following command to convert a 'RefSeq' protein file to fasta, I get a lot of warnings about "bad Genbank LOCUS line". seqret -nofeature -sequence rsnc.0312.2008.gpff -nofirstonly -outseq fasta::stdoutI tested it with version 5.0.0 and the current stable 6.0.1 emboss package. Is that a known issue?
Thanks for pointing it out. It is some time since I looked at refseq and nobody has reported this one.
We define refseq as using GenBank format. We need to make a separate Refseq parser (copy the GenBank one and fix the messages). Not hard to do.
regards, Peter Rice _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
