Hi again guys,
I found that 'http://srs.embl.de/srs' has almost all the GenBank IDs i
want.
What is the URL i should add in emboss.default ?
regards
umanga
Ashika Umanga Umagiliya wrote:
Hi all,
I used :
DB genbank [
type: N
method: url
format: genbank
url: "http://mrs.cmbi.ru.nl/mrs-web/entry.do?db=genbank_release&id=%s";
comment: "GenBank from MRS on CMBI" ]
as my GenBank DB ,but some sequence id does not exist in DB.Such as:
Error: Failed to read sequence 'genbank:AJ972404'
upError: Failed to read sequence 'genbank:AJ972403'
Error: Failed to read sequence 'genbank:CAAA01078923'
Error: Failed to read sequence 'genbank:CAAA01073483'
Error: Failed to read sequence 'genbank:10129688'
Error: Failed to read sequence 'genbank:1054739'
Error: Failed to read sequence 'genbank:112004011'
Error: Failed to read sequence 'genbank:1136277'
I tried some other servers in
http://downloads.lionbio.co.uk/publicsrs.html and most of the servers
didnt give results to the latter ids (10129688-113627).
Where can i find a server which has all this data?
best regards
Ashika Umanga Umagiliya wrote:
Thank toy Sergei and all other guys..
Now everything works fine...
thanks again
Sergei Spirin wrote:
But my query
entret genbank:AB019441
does not work well.My entry for 'genbank' database is as :
DB genbank [ type: N method: srswww format: genbank release: "NCBI"
url: "http://www.infobiogen.fr/srsbin/cgi-bin/wgetz";
comment: "GenBank from Infobiogen" ]
I checked the URL http://www.infobiogen.fr and it says the service
is down (or something like that ,cuz i dont speak french ).
Any ideas ?
Add the following to emboss.default:
DB genbank [
type: N
method: url
format: genbank
url:
"http://mrs.cmbi.ru.nl/mrs-web/entry.do?db=genbank_release&id=%s";
comment: "GenBank from MRS on CMBI" ]
Sergei
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