Magdy Alabady wrote:
Hello all,
Can backtranseq run input file contains several 100's of protein sequences
in Fasta format? can it make bulk back translation? please tell me how to do
so if it is possible
Backtranseq only processes a single sequence. You have several choices:
1. make a new version of backtranseq that can process multiple sequences
(easy to do ... but you need to learn a little EMBOSS programming first :-)
2. put your sequence file in a directory and name it with anything other
than a .fasta extension.
use seqret -ossingle to convert your file into 100s of single sequence files
run backtranseq on each of the individual files.
I wonder ... do you really want 100s of backtranslations in a single file?
regards,
Peter Rice
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