Dear all,
I am having problems using fneighbor with either fprotdist or fdnadist. The way the dist programs work is that when it prints the distance matrix, after every nine distance values a new line is printed. However, this seems to upset fneighbor which complains thus: Error: Distances file found 0 rows, expected 26 Error: Unable to read distances file 'ensmuscle2.fprotdist' Died: fneighbor terminated: Bad value for '-datafile' with -auto defined fneighbor exited with status 1... If I use a small number of sequences, then there's no problem. Or, if I manually edit the fprotdist file so as to remove the newlines, then it works fine. This is OK for me, but for the student lab it's a bit of a showstopper I looked in my archives and documentation but couldn't find anything on this. Am I missing something obvious? I am using Phylipnew 3.67, EMBOSS 6.0.1 Many thanks Scott <html><p><font face = "verdana" size = "0.8" color = "navy">This communication is intended for the addressee only. It is confidential. If you have received this communication in error, please notify us immediately and destroy the original message. You may not copy or disseminate this communication without the permission of the University. Only authorized signatories are competent to enter into agreements on behalf of the University and recipients are thus advised that the content of this message may not be legally binding on the University and may contain the personal views and opinions of the author, which are not necessarily the views and opinions of The University of the Witwatersrand, Johannesburg. All agreements between the University and outsiders are subject to South African Law unless the University agrees in writing to the contrary.</font></p></html> _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
