Hi! Is there an argument in the eprimer 3 to get an alternative output format?
Something like this, which I got once from primer3 running on a server: PRIMER_SEQUENCE_ID=HF15E08r SEQUENCE=GCATGTAATAATGCCAAAGCTCACAGCTGCAGTTGAATCTTGGGACCCGCGGAGCGAGAATGTACCAATCCATGTATGGGTACACCCATGGCTGCCAACTCTAGGGCAAAGGATAGATACACTGTGCCACTCTATCCGGTACAAGCTGAGTAGTGTCCTCCAATTATGGCAAGCTCACGATTCATCAGCTTATGCTGTGCTATCTCCATGGAAGGGTGTATTTGATCCAGCAAGTTGGGAAGACTTGATAGTGCGTTATATCATTCCTAAACTGAAAATGGCACTCCAGGAGTTCCAGATTAACCCAGCAAGCCAAAAGTTTGACCAGTTTAACTGGGTTATGATCTGGGCTTCTGCTGTCCCGGTACACCATATGGTCCATATGTTGGAAGTTGATTTCTTTAGCAAGTGGCAGCTGGTTTTGTACCATTGGCTGAGCTCACCAAATCCTGATTTCAATGAGATAATGAATTGGTAT PRIMER_PRODUCT_SIZE_RANGE=500-1000 450-500 400-450 350-400 300-350 250-300 200-250 150-200 PRIMER_OPT_TM=60.0 PRIMER_MIN_TM=58.0 PRIMER_MAX_TM=65.0 PRIMER_MAX_DIFF_TM=3.0 PRIMER_DNA_CONC=420 PRIMER_NUM_RETURN=1 PRIMER_PAIR_PENALTY=0.8691 PRIMER_LEFT_PENALTY=0.708329 PRIMER_RIGHT_PENALTY=0.160746 PRIMER_LEFT_SEQUENCE=GCATGTAATAATGCCAAAGC PRIMER_RIGHT_SEQUENCE=TTGAAATCAGGATTTGGTGA PRIMER_LEFT=0,20 PRIMER_RIGHT=458,20 PRIMER_LEFT_TM=59.292 PRIMER_RIGHT_TM=60.161 PRIMER_LEFT_GC_PERCENT=40.000 PRIMER_RIGHT_GC_PERCENT=35.000 PRIMER_LEFT_SELF_ANY=7.00 PRIMER_RIGHT_SELF_ANY=8.00 PRIMER_LEFT_SELF_END=2.00 PRIMER_RIGHT_SELF_END=2.00 PRIMER_LEFT_END_STABILITY=8.5000 PRIMER_RIGHT_END_STABILITY=7.9000 PRIMER_PAIR_COMPL_ANY=5.00 PRIMER_PAIR_COMPL_END=3.00 PRIMER_PRODUCT_SIZE=459 Thanks in advance! Stefanie _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
