Hi Stefanie, [email protected] wrote: > Hi! > > I would be interested in "superneedle" if the speed is acceptable. I'm > still looking for a fast and good enough short sequence finder/aligner > (see > http://www.mailinglistarchive.com/[email protected]/msg00941.html). > > At the moment I'm still using BLAST because I have no time to switch but > later I would like to change to another algorithm.
>From the biopython message it seems you mainly want to find exact 21-mers. Can you give an example of a query and a database so I can test the speed of current EMBOSS applications like wordfinder regards, Peter Rice _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
