Peter Rice wrote: > > Peter C. wrote: >> However, if we now convert this input file to use DOS/Windows >> newlines, and repeat the test (on Mac OS X, so Unix): >> >> $ embossversionReports the current EMBOSS version number >> 6.1.0 >> $ seqret -sequence emboss_ig.txt -sformat ig -osformat fasta -auto -filter >> H.sapiens fau mRNA, 518 bases >> ttcctctttctcgactccatcttcgcggtagctgggaccgccgttcagtcgccaatatgc >> >> i.e. The ">" is missing on all the FASTA sequences. > > Actually, it's not missing ... it is hiding. > > The sequence id has a ^M appended to it, so the '> and the id get > overwritten by the description when you look at the file.
That makes sense, and I think I can see how it might have happened. > Fixed by processing the IG format ID rather than simply copying it. > > Thanks for finding that one. Sure, Peter C. _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
