Hi, in the announcement-thread of the new EMBOSS version 6.1.0. was a request for a program allowing complete global alignments including penalties for end gaps by Daniel Barker. ( http://www.mail-archive.com/[email protected]/msg01202.html )
The suggestion was to add a command line parameter to the needle program to enable/disable the penalties. Are there any news on this topic? I have to perform a lot of pairwise global alignments (without free end gaps) and either I have to program my own software or use existing software. Needle owns all needed features except the "only free end behavior". So I am really interested in getting a version of needle able to help me ;) Thanks for the great EMBOSS package. Regards, Frank -- Dipl. Biochem. Frank Förster Department of Bioinformatics University of Würzburg, Germany Fon: +49 931 - 318 4555 Fax: +49 931 - 318 4552 [email protected] _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
