Hi,
I have only one question about the allowed gap costs in several programs. I
using needle, water and stretcher for example.
There are some restrictions to the gap costs a have to use:
1) needle: float from 0-100 for gapopen and 0-10 for gapextend
2) water: float from 0.000-10.000 for gapopen and 0.000-10.000 for gapextend
2) stretcher: positive integer
What are the meaning of these restrictions? I think you use an integer value for
stretcher (I did not check the source code) and floats for needle/water.
But why the restriction for water to three decimal places?
But more interessting, why the restriction to 0-100/0-10 for needle/water?
Thank you for your efforts!
Frank Förster
--
Dipl. Biochem. Frank Förster
Department of Bioinformatics
University of Würzburg, Germany
Fon: +49 931 - 318 4555
Fax: +49 931 - 318 4552
[email protected]
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