W dniu 29.07.2009 13:54, Julian Sikorski pisze: > W dniu 19.07.2009 18:18, [email protected] pisze: >> >>> there seem to be some problems with make install: >>> >>> /usr/bin/make install-exec-hook >>> make[7]: Entering directory >>> `/builddir/build/BUILD/EMBOSS-6.1.0/jemboss/org/emboss/jemboss/editor' >>> mkdir -p -- >>> /builddir/build/BUILDROOT/EMBOSS-6.1.0-1.fc11.x86_64/usr/share/EMBOSS/jemboss/org/emboss/jemboss/editor >>> /usr/bin/install: cannot stat `*.class': No such file or directory >> >> Looks like we didn't test the --with-java and --with-javaos configure >> options well, before this release. However, most users will not need these >> two options any more as EMBOSS-6.1.0 includes precompiled jemboss class >> files collected in a java archive file. You should hopefully not get the >> above error if you omit these two options when you configure your emboss >> installation. >> >> Regards, >> Mahmut > Thank you, removing these two seems to have done the trick! > > Julian Another problem arose. I was pointed out that another problem pointed out by rpmlint should be fixed:
EMBOSS-libs.x86_64: W: shared-lib-calls-exit /usr/lib64/libeplplot.so.3.2.7 exit@ According to the tool, it means the following: This library package calls exit() or _exit(), probably in a non-fork() context. Doing so from a library is strongly discouraged - when a library function calls exit(), it prevents the calling program from handling the error, reporting it to the user, closing files properly, and cleaning up any state that the program has. It is preferred for the library to return an actual error code and let the calling program decide how to handle the situation. Also, the guidelines [1] say that the .jar files should be compiled from source, so fixing the problem with --with-java would definitely help here. Julian [1] https://fedoraproject.org/wiki/Packaging:Java#Pre-built_JAR_files_.2F_Other_bundled_software _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
