> file of format "unpirot:accession" . Step 3 is using the command "seqret > @filename.txt". This is extraordinarily slow. It takes >12 hours to download > a fasta file containing 3K sequences. Is there a way of speeding this up?
It looks possible to get Uniprot entries from different servers, such as from uniprot.org or from the EBI either using dbfetch or SRS. You may try updating your EMBOSS uniprot db definition to point to alternative servers that may return uniprot entries faster than the current server you are using. Regards, Mahmut _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
