Thank you, problem solved. Starting the system new solved the problem ;-) There must have been some variables from a previous installation set.
Wolfgang 2011/1/12 <[email protected]>: > Thank you for your help. Really strange. > > Following situation: > # ls /usr/share/EMBOSS/ > emboss.default > # ls /usr/local/share/EMBOSS/ > acd data doc emboss.default.template jemboss plstnd5.fnt plxtnd5.fnt > test > > Then i looked into /usr/share/EMBOSS/emboss.default, but there is no > variable EMBOSS_ACDROOT set. Could it be set elsewhere? > > Thanks, > Wolfgang > > > > > > 2011/1/12 <[email protected]>: >> Well if you've installed to /usr/local then it should be >> looking for that file in /usr/local/share/EMBOSS/acd/embossversion.acd >> >> As it's looking under /usr/share... my first suspicion would be that >> you've set an environment variable incorrectly (e.g. >> EMBOSS_ACDROOT). You should not really need to set any EMBOSS >> environment variables, it should work OK without. So, if >> you have set any such envvars then try unsetting them and run >> the program again. >> >> Alan >> >> >> >> >>> Thank you, that did the job! But now i have an other error for which i >>> also can't find anything in the web: >>> >>> # embossversion >>> Error: File /usr/share/EMBOSS/acd/embossversion.acd line 0: ACD file not >>> opened >>> >>> Can you help me again? >>> >>> Thanks, >>> Wolfgang >>> >>> 2011/1/12 <[email protected]>: >>>> Hello Wolfgang, >>>> >>>> On OpenSuse that error usually means you've installed EMBOSS into >>>> /usr/local such that the libraries are in /usr/local/lib. That >>>> library directory is cached on OpenSuse so all you should need to do is, >>>> with privilege, type "/sbin/ldconfig" to rebuild the cache. >>>> >>>> HTH >>>> >>>> Alan >>>> >>>> >>>> >>>>> Hello, >>>>> >>>>> I installed stable EMBOSS 6.3.1 on OpenSuse 11.3. >>>>> >>>>> ./configure, make and make install ran without an error. But when I >>>>> try to run an EMBOSS app, i get the following error: >>>>> >>>>> # embossversion >>>>> embossversion: error while loading shared libraries: libnucleus.so.6: >>>>> cannot open shared object file: No such file or directory >>>>> >>>>> I think the attached output could help. Does anyone know what is wrong >>>>> with my installation? Do you need additional data? >>>>> >>>>> Thanks, >>>>> Wolfgang >>>>> >>>>> # ldd $(which embossversion) >>>>> linux-gate.so.1 => (0xffffe000) >>>>> libnucleus.so.6 => not found >>>>> libacd.so.6 => not found >>>>> libajaxdb.so.6 => not found >>>>> libensembl.so.6 => not found >>>>> libajaxg.so.6 => not found >>>>> libajax.so.6 => not found >>>>> libezlib.so.1 => not found >>>>> libeexpat.so.1 => not found >>>>> libepcre.so.7 => not found >>>>> libeplplot.so.3 => not found >>>>> libpq.so.5 => /usr/lib/libpq.so.5 (0xb77a4000) >>>>> libX11.so.6 => /usr/lib/libX11.so.6 (0xb7669000) >>>>> libgd.so.2 => /usr/lib/libgd.so.2 (0xb7622000) >>>>> libpng14.so.14 => /usr/lib/libpng14.so.14 (0xb75f6000) >>>>> libz.so.1 => /lib/libz.so.1 (0xb75e1000) >>>>> libm.so.6 => /lib/libm.so.6 (0xb75b7000) >>>>> libc.so.6 => /lib/libc.so.6 (0xb744c000) >>>>> libssl.so.1.0.0 => /lib/libssl.so.1.0.0 (0xb73f5000) >>>>> libcrypto.so.1.0.0 => /lib/libcrypto.so.1.0.0 (0xb7255000) >>>>> libkrb5.so.3 => /usr/lib/libkrb5.so.3 (0xb718d000) >>>>> libcom_err.so.2 => /lib/libcom_err.so.2 (0xb7187000) >>>>> libgssapi_krb5.so.2 => /usr/lib/libgssapi_krb5.so.2 >>>>> (0xb7150000) >>>>> libldap_r-2.4.so.2 => /usr/lib/libldap_r-2.4.so.2 (0xb7100000) >>>>> libpthread.so.0 => /lib/libpthread.so.0 (0xb70e5000) >>>>> libxcb.so.1 => /usr/lib/libxcb.so.1 (0xb70c5000) >>>>> libdl.so.2 => /lib/libdl.so.2 (0xb70bf000) >>>>> libXpm.so.4 => /usr/lib/libXpm.so.4 (0xb70ac000) >>>>> libjpeg.so.8 => /usr/lib/libjpeg.so.8 (0xb7073000) >>>>> libfontconfig.so.1 => /usr/lib/libfontconfig.so.1 (0xb703d000) >>>>> libfreetype.so.6 => /usr/lib/libfreetype.so.6 (0xb6fb6000) >>>>> /lib/ld-linux.so.2 (0xb77e3000) >>>>> libk5crypto.so.3 => /usr/lib/libk5crypto.so.3 (0xb6f8d000) >>>>> libkrb5support.so.0 => /usr/lib/libkrb5support.so.0 >>>>> (0xb6f84000) >>>>> libkeyutils.so.1 => /lib/libkeyutils.so.1 (0xb6f80000) >>>>> libresolv.so.2 => /lib/libresolv.so.2 (0xb6f69000) >>>>> liblber-2.4.so.2 => /usr/lib/liblber-2.4.so.2 (0xb6f59000) >>>>> libsasl2.so.2 => /usr/lib/libsasl2.so.2 (0xb6f3d000) >>>>> libXau.so.6 => /usr/lib/libXau.so.6 (0xb6f39000) >>>>> libexpat.so.1 => /lib/libexpat.so.1 (0xb6f0f000) >>>>> _______________________________________________ >>>>> EMBOSS mailing list >>>>> [email protected] >>>>> http://lists.open-bio.org/mailman/listinfo/emboss >>>>> >>>> >>>> >>>> >>> >> >> >> > _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
