Hi,
Is there any way in which one can read a DNA sequence directly from the command line (that is as a string input argument) rather than from a file? I am especially interested in finding repeats, inverted repeats etc. (e.g. 'einverted', 'etandem' EMBOSS apps). Instead of creating a FASTA file for each query sequene, I would like to read the sequence directly from the command line. Is this possible?
From http://emboss.sourceforge.net/docs/faq.html A) The "filename" is really the sequence. This is a quick and easy way of reading in a short fragment of sequence without having to enter it into a file. For example: % program -seq asis::ATGGTGAGGAGAGTTGTGATGAGA Steve _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
