Hi Jon,
Thank you! Apparently, I should have rtfm more than once.
Sincerely,
Lionel
Jon Ison wrote:
Hi Lionel
Didn't see a reply to you, sorry.
Anyhow, dreg will search the sequence as given. This is taken as the
sense/coding/+ strand.
If you specify -sreverse (which is available to any applications that read
sequences) it will I
think search the reverse complement of that sequence instead.
Cheers
Jon
Hello fellow EMBOSS fans,
I am using the dreg program to search the human genome for my favorite
motif. I was unable to find any information regarding the meaning of
the strand information in the output. Does dreg search both strands or
will it always return "+" as the strand designation of the hits that it
finds?
Thanks for your continued support and development of this fantastic tool!
Sincerely,
Lionel "Lee" Brooks 3rd
Dartmouth Genetics Grad Student
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