Hi Kevin, For starters i would get rid of the square brackets ("[]") in your command; i don't think these are necessary.
Iain Drummond On 3/9/11 6:10 PM, "Kevin Egan" <egor...@gmail.com> wrote: > Hi > > I entered the information as follows > > dotmatcher -asequence cam3.txt -bsequence TCH3A.txt [-matrixfile EDNAFULL] > [-windowsize 10] [-threshold 70] > > but got a 'too many parameters' error message. > > Does anyone know how to enter my own values for window length etc? > > Regards, > > Kevin > _______________________________________________ > EMBOSS mailing list > EMBOSS@lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/emboss > The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ EMBOSS mailing list EMBOSS@lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/emboss