Everything I have tried has failed. I have uninstalled and reinstalled
the entire EMBOSS/EMBASSY suite. I have booted from the previous
kernel. Recompilation is a bit beyond me, I fear - what are the chances
that this will just be fixed when 11.04 rolls out? Has anyone else had
this problem?
What's perplexing is that this has happened on both of my Ubuntu
systems; there's nothing that was caused by me "tinkering" - this
happened after the update to 10.10. Why didn't this get caught - am I
the only person using Phylip in Emboss Explorer?
On 03/10/2011 06:48 PM, Marvin Stodolsky wrote:
There is a:
http://packages.ubuntu.com/maverick/libnucleus6
$ sudo apt-get update
$ sudo apt-get libnucleus6
should do all necessary.
MarvS
On Thu, Mar 10, 2011 at 1:27 PM, Henrikki Almusa
<henrikki.alm...@helsinki.fi> wrote:
On 2011-03-10 17:26, Wolfgang Rumpf wrote:
So as I understand it my options are:
1. Boot with an older kernel - probably the latest one from 10.4, if it
works with 10.10;
2. Recompile EMBOSS myself;
3. Download and install the 11.04 (unreleased) Emboss/Embassy installs;
4. Wait for 11.04 to come out
Of all of these the "simplest" (other than just waiting) would probably be
to try to boot with an older kernel - I don't want to bring the rest of the
EMBOSS system down for an extended time period, perhaps very extended if the
compilation/install doesn't go as planned.
Sound about right?
The error message complains about missing library file libnucleus.so.6 which
was probably removed in update as there was no dependency on it (within the
package lists). So here's a way to fix it:
- go to packages.ubuntu.com and search for a package with file called
libnucleus.so.6
- get result which tells you that it is in package libnucleus6
- install that named package with your favourite tool (for example apt-get)
Wolfgang
Dr. Wolfgang Rumpf
Product Specialist, Rescentris Inc.
--------------------------------------------------------
wolfgang.ru...@rescentris.com
Mobile - (614) 638-6797
Skype - wolfgang.rumpf
On Mar 9, 2011, at 8:37 PM, Charles Plessy wrote:
Le Wed, Mar 09, 2011 at 07:48:41PM -0500, Marvin Stodolsky a écrit :
RE: undefined symbol: ajSeqdbInit
While not an expert at all, on Emboss code,
this type of error is typically due to (Emboss) binaries Not Yet
being compiled with the newer linux-header resources. Pending that
compilation by the Emboss maintenance team, if you run the compile
from Emboss source code on your own Ubuntu 10.10 system, all will
likely be OK.
Dear Wolfgang,
you can also give a try to the emboss and embassy-phylip from 11.04
Ubuntu
distribution. If you can install them on 10.10, they should work well,
and
they are up to date.
http://packages.ubuntu.com/natty/emboss
http://packages.ubuntu.com/natty/embassy-phylip
Have a nice day,
--
Charles Plessy
Debian Med packaging team
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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