David, I suspected as much - I think my real concern is that I don't necessarily know the proper command-line syntax to control where the installation occurs. My EMBOSS proper is in /usr/lib/emboss/; there appear to be additional files in /usr/share/emboss (e.g. acd, data, doc) and in /usr/share/emboss-explorer. These should be the default locations for the packages from the Software Center in Ubuntu.
So given that, when I configure Vienna, do I tell Vienna that it will live in /usr/share/emboss by typing ./configure --prefix=/usr/lib/emboss - or is there something I'm missing? Wolfgang Dr. Wolfgang Rumpf Product Specialist, Rescentris Inc. Adjunct Faculty, Dept. of Biotechnology, UMUC -------------------------------------------------------- wolfgang.ru...@rescentris.com wolfgang.ru...@gmail.com Mobile - (614) 638-6797 Skype - wolfgang.rumpf On Mar 16, 2011, at 5:25 AM, david.ba...@bayer.com wrote: > > Hi, > > the emboss-explorer creates the html menu on the fly by calling the emboss > program wossname. > So if you install the Vienna embassy package just in the same place like the > main emboss, the vrnafold etc. should appear in the emboss-explorer. > But I'm not using it on Ubuntu so I do not know if there are any Ubuntu > specific issues. > > HTH, > David. > > emboss-boun...@lists.open-bio.org schrieb am 15/03/2011 21:49:47: > > > One of the ideas I try to teach in my bioinformatics class is RNA > > folding - and as such I'd love to add an RNA folding algorithm to my > > bioinformatics server. It seems like the "easiest" path might be > > Vienna since there's an EMBOSS port of it. I'm not sure how to > > proceed, however - I've downloaded the source (VIENNA-1.7.2) and > > know the rough procedure for getting it installed, but I want it to > > "hook in" to my existing Ubuntu EMBOSS-Explorer (which is how my > > students access all of the other analyses we do). Any ideas how to > > modify the installation to install to the correct path so that it > > will be available in my existing applications list? > > > > Any help appreciated - thanks in advance! > > > > > > Wolfgang > > > > Dr. Wolfgang Rumpf > > Product Specialist, Rescentris Inc. > > Adjunct Faculty, Dept. of Biotechnology, UMUC > > -------------------------------------------------------- > > wolfgang.ru...@rescentris.com > > wolfgang.ru...@gmail.com > > > > Mobile - (614) 638-6797 > > Skype - wolfgang.rumpf > > > > > > > > > > _______________________________________________ > > EMBOSS mailing list > > EMBOSS@lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/emboss _______________________________________________ EMBOSS mailing list EMBOSS@lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/emboss
