Hi, On 2011-09-07, at 7:04 AM, a...@ebi.ac.uk wrote:
> Regarding the oddity: having had a look, the Ubuntu people have > decided to put some libraries in different locations from > most other linux distributions. I've modified the script > which should now , at least, fix that problem. You can download it from: > > http://www.ebi.ac.uk/~ajb/test/install-jemboss-server.sh > > (you may need to "chmod 755" it after download). Ah, Linux distros... I tried the new script, with default choices, with a clean d/l of EMBOSS and EMBASSY apps and I got this: ajjava.c:122:31: fatal error: security/pam_appl.h: No such file or directory compilation terminated. make[3]: *** [ajjava.lo] Error 1 make[3]: Leaving directory `/opt/bio/sources/EMBOSS-6.4.0/ajax/core' make[2]: *** [all] Error 2 make[2]: Leaving directory `/opt/bio/sources/EMBOSS-6.4.0/ajax/core' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/opt/bio/sources/EMBOSS-6.4.0/ajax' make: *** [all-recursive] Error 1 Let me guess: % apt-get install libpam0g-dev Right? Must be because compilation did work a-ok with the script after this install. > Wrt crypt: the above script works for me using PAM authentication > (requires libpam0g-dev installation). I can't guarantee it'll > work with other authentication methods on Ubuntu yet, given > their library organisation, but feel free to test it and let me > know. Before you do that though, please send me your > jemboss/utils/install.record file (produced automatically after you ran > the installation script - edit it to replace any sensitive info > with 'x's first) so I can see what options you had chosen to > give before the compilation failed (in order to try to > reproduce the original failure). We do, however, recommend PAM > authentication for servers on those distributions that > support PAM. I had selected shadow, which might explain this error. I actually never use jemboss in a client-server setup but rather as a local standalone resource on the server for the users to use locally via the Xfce4 GUI. BTW, the script is not using axis2c yet? It only recognized axis-1_4. Thanks for the help Sylvain _______________________________________________ EMBOSS mailing list EMBOSS@lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/emboss
