On 09/30/2011 07:22 PM, Ed Siefker wrote:
Is there a way to access NCBI Genbank remotely?
The SRS server at DKFZ is defined as a server in EMBOSS 6.4.0.0 so you
can use it with no extra definition:
seqret dkfz:genbank:x13666
You can also use query fields, for example:
seqret dkfz:genbank-id:x13776
seqret dkfz:genbank-acc:x13776
seqret 'dkfz:genbank-des:{amic & amir}'
The release should also support the NCBI Entrez server but there is a
bug in parsing the header. I will add a fix to the next patch. Then you
could also use entrez:nucleotide:x13776 which reads the genbank format
of the entry.
Hope this helps,
Peter Rice
EMBOSS Team
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