Herve, Have you tried using "getorf" and then "sizeseq"? I think it will work. Then you could get the first sequence from the output.
Best, On Tue, Dec 6, 2011 at 6:11 AM, Jon Ison <[email protected]> wrote: > A note of it is already on the SourceForge "Feature Requests" ... > > J:) > > > >> Hi Jon, >> >> That's exactly what would make me happy. Assuming it makes it easier for >> you if I formulate officially this request, where do I need to send the >> request? >> >> Hervé >> >> On 12/06/2011 12:00 PM, Jon Ison wrote: >>> Hi Hervé >>> >>> Nothing in EMBOSS so far as I'm aware, but if all you want is for >>> checktrans to report the >>> longest >>> ORF then that should be an easy enough option to add. >>> >>> Cheers >>> >>> Jon >>> >>> >>>> Hi, >>>> I have been using transeq and checktrans to find ORFs in DNA sequences. >>>> I have an question regarding the selection of the ORFs in case >>>> checktrans finds multiple ones in the result of transeq: I would like to >>>> select the longest one automatically (assuming it is the correct one). >>>> Is there any existing tool in EMBOSS (or alternatively in any Bio* >>>> library) that does this job? >>>> Cheers, >>>> Hervé >>>> _______________________________________________ >>>> EMBOSS mailing list >>>> [email protected] >>>> http://lists.open-bio.org/mailman/listinfo/emboss >>>> >>> >>> >> > > > _______________________________________________ > EMBOSS mailing list > [email protected] > http://lists.open-bio.org/mailman/listinfo/emboss -- Andrés Pinzón _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
