Hi Ahmed, There is a documentation about the setup of databases in EMBOSS at http://emboss.sourceforge.net/docs/themes/Databases.html
This is a little bit outdated now because it does not cover all features available in Version 6.4 but it is still a good starting point. If you want to dive deeply into the EMBOSS administration, there is a book written by the EMBOSS team available from Cambridge University Press: http://www.cambridge.org/gb/knowledge/isbn/item5979238/?site_locale=en_GB HTH, David. -----Ursprüngliche Nachricht----- Von: [email protected] [mailto:[email protected]] Im Auftrag von Nabeel Ahmed Gesendet: 16 July 2012 07:57 An: [email protected] Betreff: [EMBOSS] Databases I have recently installed EMBOSS-6.4.0 (Ubuntu 11.10). I am unable to make it work directly with live databases (embl, uniprot) , working totally fine with local sequence files. e.g % *plotorf * Plot potential open reading frames in a nucleotide sequence Input nucleotide sequence: *embl:x13776* *Error:* Failed to open filename 'embl'** Used 'showdb' , displayed table with zero rows. Is there any configuration, i am missing?? Thanks Ahmed _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
