I am trying to output a gff3 file to genbank format using featreprot or featcopy. I have many molecules in my gff3 file (contigs from assembly), I was wondering how to designate them as different locus so that the flat file generates a new locus for each and then displays features associated with that locus. Right now it is all written to a single locus in the outputted genbank file.
Just as example, I am wrtting my gff files as follows: Contig1 . databank_entry 1 1000 . . . organism="X";strain="Y" Contig1 . gene 171 497 . + . gene="sod" Contig1 . mRNA 171 497 . + . . Contig1 . exon 171 497 . + . . Contig1 . CDS 171 497 . + . gene="sod" Contig2 . databank_entry 1 1000 . . . organism="X";strain="Y" Contig2 . gene 3 323 . + . gene="ba" Contig2 . mRNA 3 323 . + . . Contig2 . exon 3 323 . + . . Contig2 . CDS 3 323 . + . gene="ba" And this is getting returned to me as a single locus Scott This electronic message contains information generated by the USDA solely for the intended recipients. Any unauthorized interception of this message or the use or disclosure of the information it contains may violate the law and subject the violator to civil or criminal penalties. If you believe you have received this message in error, please notify the sender and delete the email immediately. _______________________________________________ EMBOSS mailing list EMBOSS@lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/emboss
