Hi all. Am Mittwoch, dem 22.06.2022 um 08:06 +0000 schrieb David Bauer: > Hi Afif, > > There are some features in EMBOSS, which are not easy to find 😊.
So this is one more for the things to be addressed list. :-) The tfm help pages aren't bad but not especially concise or user-friendly. That's admittedly one of the least liked tasks in development but I think Emboss could benefit a lot from a rewrite to something that more resembles traditional man pages. I could volunteer to lend a hand with that (if it doesn't stay the only hand). Best, Markus > If you use e.g. "transeq -help -verbose", this will then show also the > Associated and General qualifiers and there you will see the -filter option. > > David > > -----Ursprüngliche Nachricht----- > Von: EMBOSS <[email protected]> Im Auftrag von Afif > Elghraoui > Gesendet: 22 June 2022 09:55 > An: [email protected] > Betreff: Re: [EMBOSS] contributing to emboss > > Wow, thank you Markus and David. I never noticed that option on the tool -help > menus, but this changes everything :) > > thanks and regards > Afif > > On 6/22/22 00:52, David Bauer wrote: > > Hi All, > > > > If you want the -filter as default, this can be done by setting an > > environment variable: > > setenv EMBOSS_FILTER 1 > > > > Best, > > David > > > > -----Ursprüngliche Nachricht----- > > Von: EMBOSS <[email protected]> Im Auftrag von > > Kiefer, Dr. Markus > > Gesendet: 22 June 2022 09:11 > > An: [email protected] > > Betreff: Re: [EMBOSS] contributing to emboss > > > > Hi Afif, > > > > do you know about the -filter option? But I agree, that should be the > > default. > > > > I think the retrieval functionality is in need of an overhaul. There should > > be an easier way to access modern Genbank for example, while e.g. SRS and > > GCG are much less important, meanwhile. > > > > Best, > > Markus > > > _______________________________________________ > EMBOSS mailing list > [email protected] > https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmailman.open-bio.org%2Fmailman%2Flistinfo%2Femboss&data=05%7C01%7C%7C3b5156e927d04f738dd508da54249205%7Cfcb2b37b5da0466b9b830014b67a7c78%7C0%7C0%7C637914813287911847%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=%2F2Mh5KbUeL4qgqDfHrGZxJc%2B3I9GnR0ld%2BON2%2BTWx4U%3D&reserved=0 > _______________________________________________ > EMBOSS mailing list > [email protected] > https://mailman.open-bio.org/mailman/listinfo/emboss
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