Ok - the last error was this...

http://pastebin.com/CvEBeCHg

which happened atleast 20% of the time and after talking to jepler he 
suggested adding a if port < 6: to the arduino.py code.  You can see it 
here

http://pastebin.com/PMLftHUi

line 77 is the extra 'if' statement and then every thing from line 78 to 
86 is spaced over.  (comparing to the original)

I have been starting and stopping quite a bit this morning with no errors

Yay!
sam

On 12/4/2011 6:38 AM, Schooner wrote:
> Have you tried loading the module without the -W switch?
>
> I seem to remember having problems, when experimenting with serial comms
> to an Arduino board from emc, if I used the -W(ait_until_ready) switch
>
> I loaded it right at the start of the hal file and then didn't link any
> of its pins until the end and that seemed to work.
>
> Just a thought
>
> regards
>
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