in emcc.py I saw this when I was looking at this problem earlier
(lines 2581>> in my version)

        diagnostics.warning(
            'absolute-paths', '-I or -L of an absolute path "' + arg +
            '" encountered. If this is to a local system header/library, it 
may '
            'cause problems (local system files make sense for compiling 
natively '
            'on your system, but not necessarily to JavaScript).')

maybe the same should be applied here?

Gianluca
On Wednesday, November 25, 2020 at 8:09:02 PM UTC+1 [email protected] wrote:

> Interesting...
>
> I'm not sure we can ignore CPATH, as in principle someone might use it 
> intentionally, and put a path to valid emscripten contents there.
>
> On the other hand if this is common on some OSes then it does seem like 
> something we should do something about, even if only warn.
>
> On Wed, Nov 25, 2020 at 10:51 AM Floh <[email protected]> wrote:
>
>> Oh interesting and TIL, I didn't know that CPATH thing. Maybe emcc should 
>> somehow ignore CPATH, it sounds like it could happen to more people, and 
>> it's a very obscure sort of problem.
>>
>> On Wednesday, 25 November 2020 at 19:15:03 UTC+1 [email protected] 
>> wrote:
>>
>>> That's it! `env | grep CommandLineTools` showed me 
>>> `CPATH=/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include`. I 
>>> then ran `export CPATH=''`, and then I compiled hello_world.c without any 
>>> problems. Apparently I was setting the CPATH environment variable in my 
>>> .zprofile.
>>>
>>>
>>> Thanks so much everyone!
>>>
>>> Efrem Braun
>>>
>>>
>>> On Wed, Nov 25, 2020 at 12:55 PM Floh <[email protected]> wrote:
>>>
>>>> Complete shot in the dark, but does this show anything:
>>>>
>>>> env | grep CommandLineTools
>>>>
>>>> ...basically checking if that include path shows up in any environment 
>>>> variable...
>>>>
>>>> On Wednesday, 25 November 2020 at 18:46:15 UTC+1 Floh wrote:
>>>>
>>>>> Yeah, the first include here is the problem (/Library/Developer/...). 
>>>>> The question is how this is getting in there...
>>>>>
>>>>> #include "..." search starts here:
>>>>> #include <...> search starts here:
>>>>> /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include
>>>>> /Users/edbraun/software/emsdk/upstream/emscripten/system/include/SDL
>>>>> /Users/edbraun/software/emsdk/upstream/emscripten/system/include/compat
>>>>>
>>>>> I don't know if clang/emcc has any hidden feature to get header search 
>>>>> paths from anywhere else than the command line (like an environment 
>>>>> variable maybe?), I tried googling for that but haven't found anything.
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> On Wednesday, 25 November 2020 at 18:28:26 UTC+1 [email protected] 
>>>>> wrote:
>>>>>
>>>>>> Changing the shell to bash and redoing the installation gave the same 
>>>>>> results, so it's not the zsh shell.
>>>>>>
>>>>>> It's really strange that 
>>>>>> `-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/inc` is being 
>>>>>> passed to clang, as shown by `emcc -E -v -x c /dev/null`. That does seem 
>>>>>> to 
>>>>>> be the culprit, but I don't know why that's happening or how to change 
>>>>>> it.
>>>>>>
>>>>>> Efrem Braun
>>>>>>
>>>>>>
>>>>>> On Wed, Nov 25, 2020 at 12:12 PM Efrem Braun <[email protected]> 
>>>>>> wrote:
>>>>>>
>>>>>>> Yes, I followed the instructions given here: 
>>>>>>> https://emscripten.org/docs/getting_started/downloads.html#sdk-download-and-install
>>>>>>> :
>>>>>>> git clone https://github.com/emscripten-core/emsdk.git
>>>>>>> cd emsdk
>>>>>>> ./emsdk install latest
>>>>>>> ./emsdk activate latest
>>>>>>> source ./emsdk_env.sh
>>>>>>>
>>>>>>> I just deleted the installation and tried those 5 steps again. I 
>>>>>>> immediately ran `emcc -E -v -x c /dev/null`, and it again showed 
>>>>>>> `/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include` as 
>>>>>>> the 
>>>>>>> first directory in the #include search path.
>>>>>>>
>>>>>>> Efrem Braun
>>>>>>>
>>>>>>>
>>>>>>> On Wed, Nov 25, 2020 at 12:03 PM gianluca torta <[email protected]> 
>>>>>>> wrote:
>>>>>>>
>>>>>>>> have you run emsdk_env.sh?
>>>>>>>>
>>>>>>>> Gianluca
>>>>>>>>
>>>>>>>> On Tuesday, November 24, 2020 at 5:45:09 PM UTC+1 
>>>>>>>> [email protected] wrote:
>>>>>>>>
>>>>>>>>> I installed emscripten using the standard instructions as per 
>>>>>>>>> https://emscripten.org/docs/getting_started/downloads.html#installation-instructions.
>>>>>>>>>  
>>>>>>>>> Running `emcc -v` gave me no errors, and the following message:
>>>>>>>>> ```
>>>>>>>>> (base) edbraun@gs66-lostcheme emscripten % emcc -v 
>>>>>>>>> emcc (Emscripten gcc/clang-like replacement + linker emulating GNU 
>>>>>>>>> ld) 2.0.9 
>>>>>>>>> clang version 12.0.0 
>>>>>>>>> (/opt/s/w/ir/cache/git/chromium.googlesource.com-external-github.com-llvm-llvm--project
>>>>>>>>>  
>>>>>>>>> 27e9f0f95ef7b144d008bc1cf1459dced6cb5842) 
>>>>>>>>> Target: x86_64-apple-darwin19.6.0 
>>>>>>>>> Thread model: posix 
>>>>>>>>> InstalledDir: /Users/edbraun/software/emsdk/upstream/bin 
>>>>>>>>> shared:INFO: (Emscripten: Running sanity checks)
>>>>>>>>> ```
>>>>>>>>>
>>>>>>>>> I then moved on to the tutorial. Running `emcc 
>>>>>>>>> tests/hello_world.c` gave me errors however:
>>>>>>>>> ```
>>>>>>>>> In file included from tests/hello_world.c:8: 
>>>>>>>>> In file included from 
>>>>>>>>> /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:64:
>>>>>>>>>  
>>>>>>>>> In file included from 
>>>>>>>>> /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/_stdio.h:68:
>>>>>>>>>  
>>>>>>>>>
>>>>>>>>> /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:807:2:
>>>>>>>>>  
>>>>>>>>> error: Unsupported architecture 
>>>>>>>>> #error Unsupported architecture 
>>>>>>>>> ^ 
>>>>>>>>> In file included from tests/hello_world.c:8: 
>>>>>>>>> In file included from 
>>>>>>>>> /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:64:
>>>>>>>>>  
>>>>>>>>> In file included from 
>>>>>>>>> /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/_stdio.h:71:
>>>>>>>>>  
>>>>>>>>>
>>>>>>>>> In file included from 
>>>>>>>>> /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/_types.h:27:
>>>>>>>>>  
>>>>>>>>>
>>>>>>>>> In file included from 
>>>>>>>>> /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/_types.h:33:
>>>>>>>>>  
>>>>>>>>>
>>>>>>>>> /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/machine/_types.h:34:2:
>>>>>>>>>  
>>>>>>>>> error: architecture not supported 
>>>>>>>>> #error architecture not supported 
>>>>>>>>> ^ 
>>>>>>>>> In file included from tests/hello_world.c:8: In file included from 
>>>>>>>>> /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:64:
>>>>>>>>>  
>>>>>>>>> In file included from 
>>>>>>>>> /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/_stdio.h:71:
>>>>>>>>>  
>>>>>>>>> In file included from 
>>>>>>>>> /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/_types.h:27:
>>>>>>>>>  
>>>>>>>>> /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/_types.h:55:9:
>>>>>>>>>  
>>>>>>>>> error: unknown type name '__int64_t'; did you mean '__int128_t'? 
>>>>>>>>> typedef 
>>>>>>>>> __int64_t __darwin_blkcnt_t; /* total blocks */ ^~~~~~~~~ __int128_t 
>>>>>>>>> note: '__int128_t' declared here
>>>>>>>>> ```
>>>>>>>>> And so on.
>>>>>>>>>
>>>>>>>>> I'm having trouble debugging how the installation went wrong. Any 
>>>>>>>>> tips? I'm running macOS Catalina 10.15.7 with the zsh shell.
>>>>>>>>>
>>>>>>>>> Efrem Braun
>>>>>>>>>
>>>>>>>> -- 
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>>>>>>>>  
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