Hi Kevin,

OK, the bad news: Ignoring the warning wasn't a good idea, you acknowledged that.
Was it just gnupg that was removed or may packages that depend on it? If so, your system is broken now.

On the bright side, your keys are fine:

-rw------- 1 user group 62262 févr. 29 15:22 pubring.gpg
-rw------- 1 user group  6539 févr. 29 15:22 secring.gpg
-rw------- 1 user group  1360 févr. 29 15:22 trustdb.gpg
Make sure to copy these files (regularly, at least after changes to your private key such as adding identities or subkeys) to a safe location (offline) and don't replace them when doing another backup but rather use versioned directories.

Your config is also there:
-rw-rw-r-- 1 user group    39 févr. 26 15:45 gpg-agent.conf
-rw------- 1 user group  9398 mars  17  2014 gpg.conf
check what's inside and read our troubleshooting FAQ that covers your "Cannot connect to gpg-agent" issue:
https://www.enigmail.net/index.php/en/faq?view=category&id=11#faqLink_2 -> Resolving issues with GnuPG 2.x and gpg-agent

Good Luck! Please feel free to come back with results to each step if you don't succeed.
Olav
-- 
The Enigmail Project - OpenPGP Email Security For Mozilla Applications


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