Hi John, I update my code with fastbit snapshot fastbit-scm-2009-09-01. I did some test and it is not working for me.
To make it work, I had to go back to the implementation of the segment method I first sent.
As attached document you will find the dataset I used for the test.The dataset contains 152 rows, when I run a query (select <all columns>) that should return the complete dataset, 2 rows are missing.
Here are the segment methods implementation I used to make it work.
array_t<uint32_t>*
ibis::colFloats::segment(const array_t<uint32_t>* old) const {
array_t<uint32_t>* res = new array_t<uint32_t>;
// res->push_back(0); // the first number is always 0
uint32_t j = 0;
float target = *(array->begin());
const uint32_t nelm = array->size();
if (old != 0 && old->size()>2) {
// find segments with in the previously defined segments
for (uint32_t i=0; i<old->size()-1; ++i) {
if (j < nelm) {
res->push_back(j);
target = (*array)[j];
++ j;
if (j < nelm) {
do {
while (j < (*old)[i+1] && (*array)[j] ==
target) ++
j;
if (j < (*old)[i+1]) {
res->push_back(j);
if (j < nelm) {
target = (*array)[j];
++ j;
}
}
} while (j < (*old)[i+1]);
}
};
}
}
else { // start with all elements in one segment
res->push_back(0); // the first number is always 0
uint32_t j = 1;
while (j < nelm) {
while (j < nelm && (*array)[j] == target)
++ j;
res->push_back(j);
if (j < nelm) {
target = (*array)[j];
++ j;
}
}
}
if (res->back() < nelm)
res->push_back(nelm);
return res;
} // ibis::colFloats::segment
and
ibis::array_t<uint32_t>*
ibis::colUInts::segment(const array_t<uint32_t>* old) const {
array_t<uint32_t>* res = new array_t<uint32_t>;
// res->push_back(0); // the first number is always 0
uint32_t j = 0;
uint32_t target = *(array->begin());
const uint32_t nelm = array->size();
if (old != 0 && old->size()>2) {
// find segments with in the previously defined segments
for (uint32_t i=0; i<old->size()-1; ++i) {
if (j < nelm) {
res->push_back(j);
target = (*array)[j];
++ j;
if (j < nelm) {
do {
while (j < (*old)[i+1] && (*array)[j] == target) ++
j;
if (j < (*old)[i+1]) {
res->push_back(j);
if (j < nelm) {
target = (*array)[j];
++ j;
}
}
} while (j < (*old)[i+1]);
}
};
}
}
else { // start with all elements in one segment
res->push_back(0); // the first number is always 0
uint32_t j = 1;
while (j < nelm) {
while (j < nelm && (*array)[j] == target)
++ j;
res->push_back(j);
if (j < nelm) {
target = (*array)[j];
++ j;
}
}
}
if (res->back() < nelm)
res->push_back(nelm);
return res;
} // ibis::colUInts::segment
Alexandre
[email protected] a écrit :
Send FastBit-users mailing list submissions to [email protected] To subscribe or unsubscribe via the World Wide Web, visit https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users or, via email, send a message with subject or body 'help' to [email protected] You can reach the person managing the list at [email protected] When replying, please edit your Subject line so it is more specific than "Re: Contents of FastBit-users digest..." Today's Topics: 1. Re: problem in segment method (K. John Wu) ---------------------------------------------------------------------- Message: 1 Date: Fri, 28 Aug 2009 06:56:19 -0700 From: "K. John Wu" <[email protected]> Subject: Re: [FastBit-users] problem in segment method To: FastBit Users <[email protected]> Message-ID: <[email protected]> Content-Type: text/plain; charset=ISO-8859-1; format=flowed Hi, Alexandre,You are right, I misunderstood your original message and only realized my mistake after I have sent out the first message. We have adopted your changes to ibis::colFloats::segment and have made changes to other versions of the function segment.Hope you have got a chance to try the latest snapshot <https://codeforge.lbl.gov/snapshots.php?group_id=44>. Please let us know if it correctly resolves the problem for you.Again, thanks for the feedback and your interest in FastBit. JohnPS: Since we have accepted your modified version of ibis::colFloats::segment, your name is now listed in the list of contributors <https://codeforge.lbl.gov/plugins/scmsvn/viewcvs.php/trunk/AUTHORS?root=fastbit&view=markup> along with a more detailed information in ChangeLog <https://codeforge.lbl.gov/plugins/scmsvn/viewcvs.php/trunk/ChangeLog?root=fastbit&view=markup>.On 8/28/2009 2:13 AM, Alexandre Maurel wrote:Hello John,You suspect that the last row is not in the table because of a missing end-of-line, but it is not the case. If you look at the last column of the result set (with counts), the last row has counts equals to 2.Moreover the following query : ibis -d tmp -q "select Barcode,Row,Col,Cycle,Sample where Row = 4" return the correct result. Barcode, Row, Col, Cycle, Sample (with counts) 100220, 4, 4, 38, sample2, 1 which is the last row of the table.Note that the segment method implementation I sent is working properly on this data set.Alexandre2009/8/27 <[email protected] <mailto:[email protected]>>Send FastBit-users mailing list submissions to [email protected] <mailto:[email protected]> To subscribe or unsubscribe via the World Wide Web, visit https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users or, via email, send a message with subject or body 'help' to [email protected] <mailto:[email protected]> You can reach the person managing the list at [email protected] <mailto:[email protected]> When replying, please edit your Subject line so it is more specific than "Re: Contents of FastBit-users digest..." Today's Topics: 1. problem in segment method (Alexandre Maurel) 2. problem in segment method (Alexandre Maurel) 3. Re: problem in segment method (K. John Wu) ---------------------------------------------------------------------- Message: 1 Date: Thu, 27 Aug 2009 17:55:57 +0200 From: Alexandre Maurel <[email protected] <mailto:[email protected]>> Subject: [FastBit-users] problem in segment method To: [email protected] <mailto:[email protected]> Message-ID: <[email protected] <mailto:[email protected]>> Content-Type: text/plain; charset="iso-8859-1" Hello, I used ardea to generate a table using the following : Barcode Row Col Cycle Sample 100220 1 1 30 sample1 100220 1 1 36 sample1 100220 1 2 30 sample1 100220 1 2 36 sample1 100220 2 1 30 sample1 100220 2 1 36 sample1 100220 2 2 30 sample1 100220 2 2 36 sample1 100220 3 3 38 sample2 100220 4 4 38 sample2 ardea -d tmp -m "Barcode:float,Row:float,Col:float,Cycle:float,Sample:category" -t Array.txt then using ibis, ibis -d tmp -q "select Barcode,Row,Col,Cycle,Sample where Row > 0" result gives .... Barcode, Row, Col, Cycle, Sample (with counts) 100220, 1, 1, 30, sample1, 1 100220, 1, 1, 36, sample1, 1 100220, 1, 2, 30, sample1, 1 100220, 1, 2, 36, sample1, 1 100220, 2, 1, 30, sample1, 1 100220, 2, 1, 36, sample1, 1 100220, 2, 2, 30, sample1, 1 100220, 2, 2, 36, sample1, 1 100220, 3, 3, 38, sample2, 2 which is wrong the last row is missing .... Here how I solved this bug array_t<uint32_t>* ibis::colFloats::segment(const array_t<uint32_t>* old) const { array_t<uint32_t>* res = new array_t<uint32_t>; // res->push_back(0); // the first number is always 0 uint32_t j = 0; float target = *(array->begin()); const uint32_t nelm = array->size(); if (old != 0 && old->size()>2) { // find segments with in the previously defined segments for (uint32_t i=0; i<old->size()-1; ++i) { if (j < nelm) { res->push_back(j); target = (*array)[j]; ++ j; if (j < nelm) { do { while (j < (*old)[i+1] && (*array)[j] == target) ++ j; if (j < (*old)[i+1]) { res->push_back(j); if (j < nelm) { target = (*array)[j]; ++ j; } } } while (j < (*old)[i+1]); } }; } } else { // start with all elements in one segment res->push_back(0); // the first number is always 0 uint32_t j = 1; while (j < nelm) { while (j < nelm && (*array)[j] == target) ++ j; res->push_back(j); if (j < nelm) { target = (*array)[j]; ++ j; } } } if (res->back() < nelm) res->push_back(nelm); return res; } // ibis::colFloats::segment Hope this help. Alexandre Maurel -------------- next part -------------- An HTML attachment was scrubbed... URL: http://hpcrdm.lbl.gov/pipermail/fastbit-users/attachments/20090827/962c3caa/attachment-0001.htm ------------------------------ Message: 2 Date: Thu, 27 Aug 2009 17:59:12 +0200 From: Alexandre Maurel <[email protected] <mailto:[email protected]>> Subject: [FastBit-users] problem in segment method To: [email protected] <mailto:[email protected]> Message-ID: <[email protected] <mailto:[email protected]>> Content-Type: text/plain; charset="iso-8859-1" Hello, I used ardea to generate a table using the following : Barcode Row Col Cycle Sample 100220 1 1 30 sample1 100220 1 1 36 sample1 100220 1 2 30 sample1 100220 1 2 36 sample1 100220 2 1 30 sample1 100220 2 1 36 sample1 100220 2 2 30 sample1 100220 2 2 36 sample1 100220 3 3 38 sample2 100220 4 4 38 sample2 ardea -d tmp -m "Barcode:float,Row:float,Col:float,Cycle:float,Sample:category" -t Array.txt then using ibis, ibis -d tmp -q "select Barcode,Row,Col,Cycle,Sample where Row > 0" result gives .... Barcode, Row, Col, Cycle, Sample (with counts) 100220, 1, 1, 30, sample1, 1 100220, 1, 1, 36, sample1, 1 100220, 1, 2, 30, sample1, 1 100220, 1, 2, 36, sample1, 1 100220, 2, 1, 30, sample1, 1 100220, 2, 1, 36, sample1, 1 100220, 2, 2, 30, sample1, 1 100220, 2, 2, 36, sample1, 1 100220, 3, 3, 38, sample2, 2 which is wrong the last row is missing .... Here how I solved this bug array_t<uint32_t>* ibis::colFloats::segment(const array_t<uint32_t>* old) const { array_t<uint32_t>* res = new array_t<uint32_t>; // res->push_back(0); // the first number is always 0 uint32_t j = 0; float target = *(array->begin()); const uint32_t nelm = array->size(); if (old != 0 && old->size()>2) { // find segments with in the previously defined segments for (uint32_t i=0; i<old->size()-1; ++i) { if (j < nelm) { res->push_back(j); target = (*array)[j]; ++ j; if (j < nelm) { do { while (j < (*old)[i+1] && (*array)[j] == target) ++ j; if (j < (*old)[i+1]) { res->push_back(j); if (j < nelm) { target = (*array)[j]; ++ j; } } } while (j < (*old)[i+1]); } }; } } else { // start with all elements in one segment res->push_back(0); // the first number is always 0 uint32_t j = 1; while (j < nelm) { while (j < nelm && (*array)[j] == target) ++ j; res->push_back(j); if (j < nelm) { target = (*array)[j]; ++ j; } } } if (res->back() < nelm) res->push_back(nelm); return res; } // ibis::colFloats::segment Hope this help. Alexandre Maurel -------------- next part -------------- An HTML attachment was scrubbed... URL: http://hpcrdm.lbl.gov/pipermail/fastbit-users/attachments/20090827/0928f095/attachment-0001.htm ------------------------------ Message: 3 Date: Thu, 27 Aug 2009 11:57:05 -0700 From: "K. John Wu" <[email protected] <mailto:[email protected]>> Subject: Re: [FastBit-users] problem in segment method To: FastBit Users <[email protected] <mailto:[email protected]>> Message-ID: <[email protected] <mailto:[email protected]>> Content-Type: text/plain; charset=ISO-8859-1; format=flowed Hi, Alexandre, Thanks for bring this issue to our attention. My first impression was that your input data might be missing a end-of-line or some such thing, but guess you suspect that ibis::colFloats::segment is in trouble. Would you mind check whether your input CSV file is indeed missing the end-of-line for the last line? In the mean time, I will look into ibis::colFloats::segment.. John On 8/27/2009 8:59 AM, Alexandre Maurel wrote: > Hello, > > I used ardea to generate a table using the following : > > Barcode Row Col Cycle Sample > 100220 1 1 30 sample1 > 100220 1 1 36 sample1 > 100220 1 2 30 sample1 > 100220 1 2 36 sample1 > 100220 2 1 30 sample1 > 100220 2 1 36 sample1 > 100220 2 2 30 sample1 > 100220 2 2 36 sample1 > 100220 3 3 38 sample2 > 100220 4 4 38 sample2 > > ardea -d tmp -m > "Barcode:float,Row:float,Col:float,Cycle:float,Sample:category" -t Array.txt > > then using ibis, > > ibis -d tmp -q "select Barcode,Row,Col,Cycle,Sample where Row > 0" > > result gives .... > > Barcode, Row, Col, Cycle, Sample (with counts) > 100220, 1, 1, 30, sample1, 1 > 100220, 1, 1, 36, sample1, 1 > 100220, 1, 2, 30, sample1, 1 > 100220, 1, 2, 36, sample1, 1 > 100220, 2, 1, 30, sample1, 1 > 100220, 2, 1, 36, sample1, 1 > 100220, 2, 2, 30, sample1, 1 > 100220, 2, 2, 36, sample1, 1 > 100220, 3, 3, 38, sample2, 2 > > which is wrong the last row is missing .... > > Here how I solved this bug > > array_t<uint32_t>* > ibis::colFloats::segment(const array_t<uint32_t>* old) const { > array_t<uint32_t>* res = new array_t<uint32_t>; > // res->push_back(0); // the first number is always 0 > uint32_t j = 0; > float target = *(array->begin()); > const uint32_t nelm = array->size(); > > if (old != 0 && old->size()>2) { > // find segments with in the previously defined segments > for (uint32_t i=0; i<old->size()-1; ++i) { > if (j < nelm) { > res->push_back(j); > target = (*array)[j]; > ++ j; > if (j < nelm) { > do { > while (j < (*old)[i+1] && (*array)[j] == target) > ++ j; > if (j < (*old)[i+1]) { > res->push_back(j); > if (j < nelm) { > target = (*array)[j]; > ++ j; > } > } > } while (j < (*old)[i+1]); > } > }; > } > } > else { // start with all elements in one segment > res->push_back(0); // the first number is always 0 > uint32_t j = 1; > while (j < nelm) { > while (j < nelm && (*array)[j] == target) > ++ j; > res->push_back(j); > if (j < nelm) { > target = (*array)[j]; > ++ j; > } > } > } > if (res->back() < nelm) > res->push_back(nelm); > return res; > } // ibis::colFloats::segment > > > Hope this help. > > Alexandre Maurel > > > > ------------------------------------------------------------------------ > > _______________________________________________ > FastBit-users mailing list > [email protected] <mailto:[email protected]> > https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users ------------------------------ _______________________________________________ FastBit-users mailing list [email protected] <mailto:[email protected]> https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users End of FastBit-users Digest, Vol 24, Issue 6 ******************************************** ------------------------------------------------------------------------ _______________________________________________ FastBit-users mailing list [email protected] https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users------------------------------ _______________________________________________ FastBit-users mailing list [email protected] https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users End of FastBit-users Digest, Vol 24, Issue 8 ********************************************
spotRow spotCol ID Sequence Tyr UniprotAccession
Description Xoff Yoff
-1 -1 #REF Na Na Na Na 0 0
-3 -1 #REF Na Na Na Na 0 0
-5 -1 #REF Na Na Na Na 0 0
-3 -2 #REF Na Na Na Na 0 0
-2 -20 #REF Na Na Na Na 0 0
-4 -20 #REF Na Na Na Na 0 0
-6 -20 #REF Na Na Na Na 0 0
-6 -19 #REF Na Na Na Na 0 0
1 1 41_654_666 LDGENIYIRHSNL [660] P11171 Protein 4.1
(Band 4.1) (P4.1) (EPB4.1) (4.1R). 0 0
1 2 ACHD_383_395 YISKAEEYFLLKS [383, 390] Q07001
Acetylcholine receptor subunit delta precursor. 0 0
1 3 AMPE_5_17 EREGSKRYCIQTK [12] Q07075 Glutamyl
aminopeptidase (EC 3.4.11.7) (EAP) (Aminopeptidase A) (APA)(Differentiation
antigen gp160) (CD249 antigen). 0 0
1 4 ANXA1_14_26 IENEEQEYVQTVK [21] P04083 Annexin A1
(Annexin-1) (Annexin I) (Lipocortin I) (Calpactin II)(Chromobindin-9) (p35)
(Phospholipase A2 inhibitory protein). 0 0
1 5 ANXA2_17_29 HSTPPSAYGSVKA [24] P07355 Annexin A2
(Annexin-2) (Annexin II) (Lipocortin II) (Calpactin I heavychain)
(Chromobindin-8) (p36) (Protein I) (Placental anticoagulantprotein IV)
(PAP-IV). 0 0
1 6 ART_004_EAIYAAPFAKKKXC EAIYAAPFAKKK Na Na Na
0 0
1 7 B3AT_39_51 TEATATDYHTTSH [46] P02730 Band 3 anion
transport protein (Anion exchange protein 1) (AE 1)(Solute carrier family 4
member 1) (CD233 antigen). 0 0
1 8 CTNB1_79_91 VADIDGQYAMTRA [86] P35222 Catenin beta-1
(Beta-catenin). 0 0
1 9 C1R_199_211 TEASGYISSLEYP [204, 210] P00736
Complement C1r subcomponent precursor (EC 3.4.21.41) (Complementcomponent 1, r
subcomponent) [Contains: Complement C1r subcomponentheavy chain; Complement C1r
subcomponent light chain]. 0 0
1 10 CALM_93_105 FDKDGNGYISAAE [100] P62158 Calmodulin
(CaM). 0 0
1 11 PGFRB_1014_1028 PNEGDNDYIIPLPDP [1021] P09619 Beta-type
platelet-derived growth factor receptor precursor(EC 2.7.10.1) (PDGF-R-beta)
(CD140b antigen). 0 0
1 12 ART_003_EAI(pY)AAPFAKKKXC EAI(pY)AAPFAKKK Na Na
Na 0 0
2 1 CALM_95_107 KDGNGYISAAELR [100] P62158 Calmodulin
(CaM). 0 0
2 2 CBL_693_705 EGEEDTEYMTPSS [700] P22681 E3
ubiquitin-protein ligase CBL (EC 6.3.2.-) (Signal transductionprotein CBL)
(Proto-oncogene c-CBL) (Casitas B-lineage lymphoma proto-oncogene) (RING finger
protein 55). 0 0
2 3 CD3Z_116_128 KDKMAEAYSEIGM [123] P20963 T-cell surface
glycoprotein CD3 zeta chain precursor (T-cell receptorT3 zeta chain) (CD247
antigen). 0 0
2 4 CD3Z_146_158 STATKDTYDALHM [153] P20963 T-cell surface
glycoprotein CD3 zeta chain precursor (T-cell receptorT3 zeta chain) (CD247
antigen). 0 0
2 5 CD79A_181_193 EYEDENLYEGLNL [182, 188] P11912 B-cell
antigen receptor complex-associated protein alpha-chainprecursor (Ig-alpha)
(MB-1 membrane glycoprotein) (Surface IgM-associated protein) (Membrane-bound
immunoglobulin-associated protein)(CD79a antigen). 0 0
2 6 CDK2_8_20 EKIGEGTYGVVYK [15, 19] P24941 Cell
division protein kinase 2 (EC 2.7.11.22) (p33 protein kinase). 0 0
2 7 CDK7_157_169 GLAKSFGSPNRAY [169] P50613 Cell division
protein kinase 7 (EC 2.7.11.22) (EC 2.7.11.23) (CDK-activating kinase) (CAK)
(TFIIH basal transcription factor complexkinase subunit) (39 kDa protein
kinase) (P39 Mo15) (STK1) (CAK1). 0 0
2 8 CRK_214_226 GPPEPGPYAQPSV [221] P46108 Proto-oncogene
C-crk (p38) (Adapter molecule crk). 0 0
2 9 DCX_109_121 GIVYAVSSDRFRS [112] O43602 Neuronal
migration protein doublecortin (Lissencephalin-X) (Lis-X)(Doublin). 0 0
2 10 DDR1_506_518 LLLSNPAYRLLLA [513] Q08345 Epithelial
discoidin domain-containing receptor 1 precursor(EC 2.7.10.1) (Epithelial
discoidin domain receptor 1) (Tyrosinekinase DDR) (Discoidin receptor tyrosine
kinase) (Tyrosine-proteinkinase CAK) (Cell adhesion kinase) (TRK E)
(Protein-tyrosine kinaseRTK 6) (HGK2) (CD167a antigen). 0 0
2 11 DYR1A_212_224 KHDTEMKYYIVHL [219, 220] Q13627 Dual
specificity tyrosine-phosphorylation-regulated kinase 1A(EC 2.7.12.1) (Protein
kinase minibrain homolog) (MNBH) (HP86) (Dualspecificity YAK1-related kinase)
(hMNB). 0 0
2 12 DYR1A_312_324 CQLGQRIYQYIQS [319, 321] Q13627 Dual
specificity tyrosine-phosphorylation-regulated kinase 1A(EC 2.7.12.1) (Protein
kinase minibrain homolog) (MNBH) (HP86) (Dualspecificity YAK1-related kinase)
(hMNB). 0 0
3 1 EFS_246_258 GGTDEGIYDVPLL [253] O43281 Embryonal
Fyn-associated substrate (HEFS). 0 0
3 2 EFS_246_258_Y253F GGTDEGIFDVPLL [] O43281
Embryonal Fyn-associated substrate (HEFS). 0 0
3 3 EGFR_1062_1074 EDSFLQRYSSDPT [1069] P00533 Epidermal
growth factor receptor precursor (EC 2.7.10.1) (Receptortyrosine-protein kinase
ErbB-1). 0 0
3 4 EGFR_1103_1115 GSVQNPVYHNQPL [1110] P00533 Epidermal
growth factor receptor precursor (EC 2.7.10.1) (Receptortyrosine-protein kinase
ErbB-1). 0 0
3 5 EGFR_1118_1130 APSRDPHYQDPHS [1125] P00533 Epidermal
growth factor receptor precursor (EC 2.7.10.1) (Receptortyrosine-protein kinase
ErbB-1). 0 0
3 6 EGFR_1165_1177 ISLDNPDYQQDFF [1172] P00533 Epidermal
growth factor receptor precursor (EC 2.7.10.1) (Receptortyrosine-protein kinase
ErbB-1). 0 0
3 7 EGFR_1190_1202 STAENAEYLRVAP [1197] P00533 Epidermal
growth factor receptor precursor (EC 2.7.10.1) (Receptortyrosine-protein kinase
ErbB-1). 0 0
3 8 EGFR_862_874 LGAEEKEYHAEGG [869] P00533 Epidermal
growth factor receptor precursor (EC 2.7.10.1) (Receptortyrosine-protein kinase
ErbB-1). 0 0
3 9 EGFR_908_920 MTFGSKPYDGIPA [915] P00533 Epidermal
growth factor receptor precursor (EC 2.7.10.1) (Receptortyrosine-protein kinase
ErbB-1). 0 0
3 10 ENOG_37_49 SGASTGIYEALEL [44] P09104 Gamma-enolase
(EC 4.2.1.11) (2-phospho-D-glycerate hydro-lyase)(Neural enolase)
(Neuron-specific enolase) (NSE) (Enolase 2). 0 0
3 11 EPHA1_774_786 LDDFDGTYETQGG [781] P21709 Ephrin type-A
receptor 1 precursor (EC 2.7.10.1) (Tyrosine-proteinkinase receptor EPH). 0
0
3 12 EPHA2_581_593 QLKPLKTYVDPHT [588] P29317 Ephrin type-A
receptor 2 precursor (EC 2.7.10.1) (Tyrosine-proteinkinase receptor ECK)
(Epithelial cell kinase). 0 0
4 1 EPHA2_765_777 EDDPEATYTTSGG [772] P29317 Ephrin type-A
receptor 2 precursor (EC 2.7.10.1) (Tyrosine-proteinkinase receptor ECK)
(Epithelial cell kinase). 0 0
4 2 EPHA4_589_601 LNQGVRTYVDPFT [596] P54764 Ephrin type-A
receptor 4 precursor (EC 2.7.10.1) (Tyrosine-proteinkinase receptor SEK)
(Receptor protein-tyrosine kinase HEK8)(Tyrosine-protein kinase TYRO1). 0
0
4 3 EPHA4_921_933 QAIKMDRYKDNFT [928] P54764 Ephrin type-A
receptor 4 precursor (EC 2.7.10.1) (Tyrosine-proteinkinase receptor SEK)
(Receptor protein-tyrosine kinase HEK8)(Tyrosine-protein kinase TYRO1). 0
0
4 4 EPHA7_607_619 TYIDPETYEDPNR [608, 614] Q15375 Ephrin
type-A receptor 7 precursor (EC 2.7.10.1) (Tyrosine-proteinkinase receptor
EHK-3) (EPH homology kinase 3) (Receptor protein-tyrosine kinase HEK11). 0
0
4 5 EPHB1_771_783 DDTSDPTYTSSLG [778] P54762 Ephrin type-B
receptor 1 precursor (EC 2.7.10.1) (Tyrosine-proteinkinase receptor EPH-2)
(NET) (HEK6) (ELK). 0 0
4 6 EPHB1_921_933 SAIKMVQYRDSFL [928] P54762 Ephrin type-B
receptor 1 precursor (EC 2.7.10.1) (Tyrosine-proteinkinase receptor EPH-2)
(NET) (HEK6) (ELK). 0 0
4 7 EPHB4_583_595 IGHGTKVYIDPFT [590] P54760 Ephrin type-B
receptor 4 precursor (EC 2.7.10.1) (Tyrosine-proteinkinase receptor HTK)
(Tyrosine-protein kinase TYRO11). 0 0
4 8 EPOR_361_373 SEHAQDTYLVLDK [368] P19235 Erythropoietin
receptor precursor (EPO-R). 0 0
4 9 EPOR_419_431 ASAASFEYTILDP [426] P19235 Erythropoietin
receptor precursor (EPO-R). 0 0
4 10 ERBB2_1241_1253 PTAENPEYLGLDV [1248] P04626 Receptor
tyrosine-protein kinase erbB-2 precursor (EC 2.7.10.1)(p185erbB2) (C-erbB-2)
(NEU proto-oncogene) (Tyrosine kinase-type cellsurface receptor HER2) (MLN 19)
(CD340 antigen). 0 0
4 11 ERBB2_870_882 LDIDETEYHADGG [877] P04626 Receptor
tyrosine-protein kinase erbB-2 precursor (EC 2.7.10.1)(p185erbB2) (C-erbB-2)
(NEU proto-oncogene) (Tyrosine kinase-type cellsurface receptor HER2) (MLN 19)
(CD340 antigen). 0 0
4 12 ERBB4_1181_1193 QALDNPEYHNASN [1188] Q15303 Receptor
tyrosine-protein kinase erbB-4 precursor (EC 2.7.10.1)(p180erbB4) (Tyrosine
kinase-type cell surface receptor HER4). 0 0
5 1 ERBB4_1277_1289 IVAENPEYLSEFS [1284] Q15303 Receptor
tyrosine-protein kinase erbB-4 precursor (EC 2.7.10.1)(p180erbB4) (Tyrosine
kinase-type cell surface receptor HER4). 0 0
5 2 FABPH_13_25 DSKNFDDYMKSLG [20] P05413 Fatty
acid-binding protein, heart (H-FABP) (Heart-type fatty acid-binding protein)
(Muscle fatty acid-binding protein) (M-FABP)(Mammary-derived growth inhibitor)
(MDGI). 0 0
5 3 FAK1_569_581 RYMEDSTYYKASK [570, 576, 577] Q05397 Focal
adhesion kinase 1 (EC 2.7.10.2) (FADK 1) (pp125FAK) (Protein-tyrosine kinase
2). 0 0
5 4 FAK2_572_584 RYIEDEDYYKASV [573, 579, 580] Q14289 Protein
tyrosine kinase 2 beta (EC 2.7.10.2) (Focal adhesion kinase 2)(FADK 2)
(Proline-rich tyrosine kinase 2) (Cell adhesion kinase beta)(CAK beta)
(Calcium-dependent tyrosine kinase) (CADTK) (Relatedadhesion focal tyrosine
kinase) (RAFTK). 0 0
5 5 FER_707_719 RQEDGGVYSSSGL [714] P16591 Proto-oncogene
tyrosine-protein kinase FER (EC 2.7.10.2) (p94-FER) (c-FER) (Tyrosine kinase
3). 0 0
5 6 FES_706_718 REEADGVYAASGG [713] P07332 Proto-oncogene
tyrosine-protein kinase Fes/Fps (EC 2.7.10.2) (C-Fes). 0 0
5 7 FGFR1_761_773 TSNQEYLDLSMPL [766] P11362 Basic
fibroblast growth factor receptor 1 precursor (EC 2.7.10.1)(FGFR-1) (bFGF-R)
(Fms-like tyrosine kinase 2) (c-fgr) (CD331antigen). 0 0
5 8 FGFR2_762_774 TLTTNEEYLDLSQ [769] P21802 Fibroblast
growth factor receptor 2 precursor (EC 2.7.10.1) (FGFR-2)(Keratinocyte growth
factor receptor 2) (CD332 antigen). 0 0
5 9 FGFR3_641_653 DVHNLDYYKKTTN [647, 648] P22607
Fibroblast growth factor receptor 3 precursor (EC 2.7.10.1) (FGFR-3)(CD333
antigen). 0 0
5 10 FGFR3_753_765 TVTSTDEYLDLSA [760] P22607 Fibroblast
growth factor receptor 3 precursor (EC 2.7.10.1) (FGFR-3)(CD333 antigen). 0
0
5 11 FRK_380_392 KVDNEDIYESRHE [387] P42685
Tyrosine-protein kinase FRK (EC 2.7.10.2) (FYN-related kinase)(Nuclear tyrosine
protein kinase RAK). 0 0
5 12 INSR_1348_1360 SLGFKRSYEEHIP [1355] P06213 Insulin
receptor precursor (EC 2.7.10.1) (IR) (CD220 antigen)[Contains: Insulin
receptor subunit alpha; Insulin receptor subunitbeta]. 0 0
6 1 INSR_992_1004 YASSNPEYLSASD [992, 999] P06213 Insulin
receptor precursor (EC 2.7.10.1) (IR) (CD220 antigen)[Contains: Insulin
receptor subunit alpha; Insulin receptor subunitbeta]. 0 0
6 2 JAK1_1015_1027 AIETDKEYYTVKD [1022, 1023] P23458
Tyrosine-protein kinase JAK1 (EC 2.7.10.2) (Janus kinase 1) (JAK-1). 0 0
6 3 JAK2_563_577 VRREVGDYGQLHETE [570] O60674
Tyrosine-protein kinase JAK2 (EC 2.7.10.2) (Janus kinase 2) (JAK-2). 0 0
6 4 K2C6B_53_65 GAGFGSRSLYGLG [62] P04259 Keratin, type
II cytoskeletal 6B (Cytokeratin-6B) (CK 6B) (K6bkeratin). 0 0
6 5 K2C8_425_437 SAYGGLTSPGLSY [427, 437] P05787
Keratin, type II cytoskeletal 8 (Cytokeratin-8) (CK-8) (Keratin-8)(K8). 0 0
6 6 KSYK_518_530 ALRADENYYKAQT [525, 526] P43405
Tyrosine-protein kinase SYK (EC 2.7.10.2) (Spleen tyrosine kinase). 0 0
6 7 LAT_194_206 MESIDDYVNVPES [200] O43561 Linker for
activation of T-cells family member 1 (36 kDa phospho-tyrosine adapter protein)
(pp36) (p36-38). 0 0
6 8 LAT_249_261 EEGAPDYENLQEL [255] O43561 Linker for
activation of T-cells family member 1 (36 kDa phospho-tyrosine adapter protein)
(pp36) (p36-38). 0 0
6 9 LCK_387_399 RLIEDNEYTAREG [394] P06239 Proto-oncogene
tyrosine-protein kinase LCK (EC 2.7.10.2) (p56-LCK)(Lymphocyte cell-specific
protein-tyrosine kinase) (LSK) (T cell-specific protein-tyrosine kinase). 0
0
6 10 MBP_198_210 ARTAHYGSLPQKS [203] P02686 Myelin basic
protein (MBP) (Myelin A1 protein) (Myelin membraneencephalitogenic protein).
0 0
6 11 MBP_259_271 FGYGGRASDYKSA [261, 268] P02686 Myelin
basic protein (MBP) (Myelin A1 protein) (Myelin membraneencephalitogenic
protein). 0 0
6 12 MBP_263_275 GRASDYKSAHKGF [268] P02686 Myelin basic
protein (MBP) (Myelin A1 protein) (Myelin membraneencephalitogenic protein).
0 0
7 1 MET_1227_1239 RDMYDKEYYSVHN [1230, 1234, 1235] P08581
Hepatocyte growth factor receptor precursor (EC 2.7.10.1) (HGFreceptor)
(Scatter factor receptor) (SF receptor) (HGF/SF receptor)(Met proto-oncogene
tyrosine kinase) (c-Met). 0 0
7 2 MK01_180_192 HTGFLTEYVATRW [187] P28482
Mitogen-activated protein kinase 1 (EC 2.7.11.24) (Extracellular
signal-regulated kinase 2) (ERK-2) (Mitogen-activated protein kinase 2) (MAP
kinase 2) (MAPK 2) (p42-MAPK) (ERT1). 0 0
7 3 MK01_198_210 IMLNSKGYTKSID [205] P28482
Mitogen-activated protein kinase 1 (EC 2.7.11.24) (Extracellular
signal-regulated kinase 2) (ERK-2) (Mitogen-activated protein kinase 2) (MAP
kinase 2) (MAPK 2) (p42-MAPK) (ERT1). 0 0
7 4 MK07_211_223 AEHQYFMTEYVAT [215, 220] Q13164
Mitogen-activated protein kinase 7 (EC 2.7.11.24)
(Extracellularsignal-regulated kinase 5) (ERK-5) (ERK4) (BMK1 kinase). 0
0
7 5 MK10_216_228 TSFMMTPYVVTRY [223, 228] P53779
Mitogen-activated protein kinase 10 (EC 2.7.11.24) (Stress-activated protein
kinase JNK3) (c-Jun N-terminal kinase 3) (MAP kinase p49 3F12). 0 0
7 6 MK12_178_190 ADSEMTGYVVTRW [185] P53778
Mitogen-activated protein kinase 12 (EC 2.7.11.24)
(Extracellularsignal-regulated kinase 6) (ERK-6) (ERK5) (Stress-activated
proteinkinase 3) (Mitogen-activated protein kinase p38 gamma) (MAP kinase
p38gamma). 0 0
7 7 MK14_173_185 RHTDDEMTGYVAT [182] Q16539
Mitogen-activated protein kinase 14 (EC 2.7.11.24) (Mitogen-activatedprotein
kinase p38 alpha) (MAP kinase p38 alpha) (Cytokine suppressiveanti-inflammatory
drug-binding protein) (CSAID-binding protein) (CSBP)(MAX-interacting protein 2)
(MAP kinase MXI2) (SAPK2A). 0 0
7 8 NCF1_313_325 QRSRKRLSQDAYR [324] P14598 Neutrophil
cytosol factor 1 (NCF-1) (Neutrophil NADPH oxidase factor1) (47 kDa neutrophil
oxidase factor) (p47-phox) (NCF-47K) (47 kDaautosomal chronic granulomatous
disease protein) (Nox organizer 2)(Nox-organizing protein 2) (SH3 and PX
domain-containing protein 1A). 0 0
7 9 NPT2A_501_513 AKALGKRTAKYRW [511] Q06495
Sodium-dependent phosphate transport protein 2A (Sodium/phosphatecotransporter
2A) (Na(+)/Pi cotransporter 2A) (Sodium-phosphatetransport protein 2A)
(Na(+)-dependent phosphate cotransporter 2A)(NaPi-2a) (Solute carrier family 34
member 1) (NaPi-3). 0 0
7 10 NTRK1_489_501 HIIENPQYFSDAC [496] P04629 High affinity
nerve growth factor receptor precursor (EC 2.7.10.1)(Neurotrophic tyrosine
kinase receptor type 1) (TRK1-transformingtyrosine kinase protein) (p140-TrkA)
(Trk-A). 0 0
7 11 NTRK2_509_521 PVIENPQYFGITN [516] Q16620 BDNF/NT-3
growth factors receptor precursor (EC 2.7.10.1)(Neurotrophic tyrosine kinase
receptor type 2) (TrkB tyrosine kinase)(GP145-TrkB) (Trk-B). 0 0
7 12 NTRK2_696_708 GMSRDVYSTDYYR [702, 706, 707] Q16620
BDNF/NT-3 growth factors receptor precursor (EC 2.7.10.1)(Neurotrophic tyrosine
kinase receptor type 2) (TrkB tyrosine kinase)(GP145-TrkB) (Trk-B). 0 0
8 1 ODBA_340_352 DDSSAYRSVDEVN [345] P12694
2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial precursor(EC
1.2.4.4) (Branched-chain alpha-keto acid dehydrogenase E1component alpha chain)
(BCKDH E1-alpha) (BCKDE1A). 0 0
8 2 ODPAT_291_303 SMSDPGVSYRTRE [299] P29803 Pyruvate
dehydrogenase E1 component subunit alpha, testis-specificform, mitochondrial
precursor (EC 1.2.4.1) (PDHE1-A type II). 0 0
8 3 PP2AB_297_309 EPHVTRRTPDYFL [307] P62714
Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform(EC
3.1.3.16) (PP2A-beta). 0 0
8 4 P85A_600_612 NENTEDQYSLVED [607] P27986
Phosphatidylinositol 3-kinase regulatory subunit alpha (PI3-kinase p85subunit
alpha) (PtdIns-3-kinase p85-alpha) (PI3K). 0 0
8 5 PAXI_111_123 VGEEEHVYSFPNK [118] P49023 Paxillin.
0 0
8 6 PAXI_24_36 FLSEETPYSYPTG [31, 33] P49023
Paxillin. 0 0
8 7 PDPK1_2_14 ARTTSQLYDAVPI [9] O15530
3-phosphoinositide-dependent protein kinase 1 (EC 2.7.11.1) (hPDK1). 0 0
8 8 PDPK1_369_381 DEDCYGNYDNLLS [373, 376] O15530
3-phosphoinositide-dependent protein kinase 1 (EC 2.7.11.1) (hPDK1). 0 0
8 9 PECA1_706_718 KKDTETVYSEVRK [713] P16284 Platelet
endothelial cell adhesion molecule precursor (PECAM-1)(EndoCAM) (GPIIA') (CD31
antigen). 0 0
8 10 PERI_458_470 QRSELDKSSAHSY [470] P41219 Peripherin.
0 0
8 11 PGFRB_1002_1014 LDTSSVLYTAVQP [1009] P09619 Beta-type
platelet-derived growth factor receptor precursor(EC 2.7.10.1) (PDGF-R-beta)
(CD140b antigen). 0 0
8 12 PGFRB_572_584 VSSDGHEYIYVDP [579, 581] P09619
Beta-type platelet-derived growth factor receptor precursor(EC 2.7.10.1)
(PDGF-R-beta) (CD140b antigen). 0 0
9 1 PGFRB_709_721 RPPSAELYSNALP [716] P09619 Beta-type
platelet-derived growth factor receptor precursor(EC 2.7.10.1) (PDGF-R-beta)
(CD140b antigen). 0 0
9 2 PGFRB_768_780 SSNYMAPYDNYVP [771, 775, 778] P09619
Beta-type platelet-derived growth factor receptor precursor(EC 2.7.10.1)
(PDGF-R-beta) (CD140b antigen). 0 0
9 3 PGFRB_771_783 YMAPYDNYVPSAP [771, 775, 778] P09619
Beta-type platelet-derived growth factor receptor precursor(EC 2.7.10.1)
(PDGF-R-beta) (CD140b antigen). 0 0
9 4 PLCG1_1246_1258 EGSFESRYQQPFE [1253] P19174
1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-1(EC 3.1.4.11)
(Phosphoinositide phospholipase C) (PLC-gamma-1)(Phospholipase C-gamma-1)
(PLC-II) (PLC-148). 0 0
9 5 PLCG1_764_776 IGTAEPDYGALYE [771, 775] P19174
1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-1(EC 3.1.4.11)
(Phosphoinositide phospholipase C) (PLC-gamma-1)(Phospholipase C-gamma-1)
(PLC-II) (PLC-148). 0 0
9 6 PLCG1_776_788 EGRNPGFYVEANP [783] P19174
1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-1(EC 3.1.4.11)
(Phosphoinositide phospholipase C) (PLC-gamma-1)(Phospholipase C-gamma-1)
(PLC-II) (PLC-148). 0 0
9 7 PRGR_545_557 LRPDSEASQSPQY [557] P06401 Progesterone
receptor (PR) (Nuclear receptor subfamily 3 group Cmember 3). 0 0
9 8 PRGR_786_798 EQRMKESSFYSLC [795] P06401 Progesterone
receptor (PR) (Nuclear receptor subfamily 3 group Cmember 3). 0 0
9 9 PRRX2_202_214 WTASSPYSTVPPY [208, 214] Q99811 Paired
mesoderm homeobox protein 2 (PRX-2) (Paired-related homeoboxprotein 2). 0
0
9 10 PTN11_539_551 SKRKGHEYTNIKY [546, 551] Q06124
Tyrosine-protein phosphatase non-receptor type 11 (EC
3.1.3.48)(Protein-tyrosine phosphatase 2C) (PTP-2C) (PTP-1D) (SH-PTP3)
(SH-PTP2) (SHP-2) (Shp2). 0 0
9 11 RAF1_332_344 PRGQRDSSYYWEI [340, 341] P04049 RAF
proto-oncogene serine/threonine-protein kinase (EC 2.7.11.1) (Raf-1) (C-RAF)
(cRaf). 0 0
9 12 RASA1_453_465 TVDGKEIYNTIRR [460] P20936 Ras
GTPase-activating protein 1 (GTPase-activating protein) (GAP) (Rasp21 protein
activator) (p120GAP) (RasGAP). 0 0
10 1 RB_804_816 IYISPLKSPYKIS [805, 813] P06400
Retinoblastoma-associated protein (PP110) (P105-RB) (RB). 0 0
10 2 RBL2_99_111 VPTVSKGTVEGNY [111] Q08999
Retinoblastoma-like protein 2 (130 kDa retinoblastoma-associatedprotein) (p130)
(PRB2) (RBR-2). 0 0
10 3 RET_1022_1034 TPSDSLIYDDGLS [1029] P07949 Proto-oncogene
tyrosine-protein kinase receptor ret precursor(EC 2.7.10.1) (C-ret). 0
0
10 4 RET_680_692 AQAFPVSYSSSGA [687] P07949 Proto-oncogene
tyrosine-protein kinase receptor ret precursor(EC 2.7.10.1) (C-ret). 0
0
10 5 RON_1346_1358 SALLGDHYVQLPA [1353] Q04912
Macrophage-stimulating protein receptor precursor (EC 2.7.10.1) (MSPreceptor)
(p185-Ron) (CD136 antigen) (CDw136) [Contains: Macrophage-stimulating protein
receptor alpha chain; Macrophage-stimulatingprotein receptor beta chain]. 0
0
10 6 RON_1353_1365 YVQLPATYMNLGP [1353, 1360] Q04912
Macrophage-stimulating protein receptor precursor (EC 2.7.10.1) (MSPreceptor)
(p185-Ron) (CD136 antigen) (CDw136) [Contains: Macrophage-stimulating protein
receptor alpha chain; Macrophage-stimulatingprotein receptor beta chain]. 0
0
10 7 SRC8_CHICK_470_482 VSQREAEYEPETV [477] Q01406 Src
substrate protein p85 (p80) (Cortactin). 0 0
10 8 SRC8_CHICK_476_488 EYEPETVYEVAGA [477, 483] Q01406
Src substrate protein p85 (p80) (Cortactin). 0 0
10 9 SRC8_CHICK_492_504 YQAEENTYDEYEN [492, 499, 502] Q01406
Src substrate protein p85 (p80) (Cortactin). 0 0
10 10 STA5A_687_699 LAKAVDGYVKPQI [694] P42229 Signal
transducer and activator of transcription 5A. 0 0
10 11 STAT1_694_706 DGPKGTGYIKTEL [701] P42224 Signal
transducer and activator of transcription 1-alpha/beta(Transcription factor
ISGF-3 components p91/p84). 0 0
10 12 STAT3_698_710 DPGSAAPYLKTKF [705] P40763 Signal
transducer and activator of transcription 3 (Acute-phaseresponse factor).
0 0
11 1 STAT4_686_698 TERGDKGYVPSVF [693] Q14765 Signal
transducer and activator of transcription 4. 0 0
11 2 STAT4_714_726 PSDLLPMSPSVYA [725] Q14765 Signal
transducer and activator of transcription 4. 0 0
11 3 STAT6_634_646 MGKDGRGYVPATI [641] P42226 Signal
transducer and activator of transcription 6 (IL-4 Stat). 0 0
11 4 TEC_512_524 RYFLDDQYTSSSG [513, 519] P42680
Tyrosine-protein kinase Tec (EC 2.7.10.2). 0 0
11 5 TNNT1_2_14 SDTEEQEYEEEQP [9] P13805 Troponin T,
slow skeletal muscle (TnTs) (Slow skeletal muscle troponinT) (sTnT). 0
0
11 6 TYRO3_679_691 KIYSGDYYRQGCA [681, 685, 686] Q06418
Tyrosine-protein kinase receptor TYRO3 precursor (EC 2.7.10.1)(Tyrosine-protein
kinase RSE) (Tyrosine-protein kinase SKY) (Tyrosine-protein kinase DTK)
(Protein-tyrosine kinase byk). 0 0
11 7 VGFR1_1040_1052 DFGLARDIYKNPD [1048] P17948 Vascular
endothelial growth factor receptor 1 precursor (EC 2.7.10.1)(VEGFR-1) (Vascular
permeability factor receptor) (Tyrosine-proteinkinase receptor FLT) (Flt-1)
(Tyrosine-protein kinase FRT) (Fms-liketyrosine kinase 1). 0 0
11 8 VGFR1_1046_1058_Y1048F DIFKNPDYVRKGD [1053] P17948
Vascular endothelial growth factor receptor 1 precursor (EC 2.7.10.1)(VEGFR-1)
(Vascular permeability factor receptor) (Tyrosine-proteinkinase receptor FLT)
(Flt-1) (Tyrosine-protein kinase FRT) (Fms-liketyrosine kinase 1). 0 0
11 9 VGFR1_1049_1061 KNPDYVRKGDTRL [1053] P17948 Vascular
endothelial growth factor receptor 1 precursor (EC 2.7.10.1)(VEGFR-1) (Vascular
permeability factor receptor) (Tyrosine-proteinkinase receptor FLT) (Flt-1)
(Tyrosine-protein kinase FRT) (Fms-liketyrosine kinase 1). 0 0
11 10 VGFR1_1162_1174 VQQDGKDYIPINA [1169] P17948 Vascular
endothelial growth factor receptor 1 precursor (EC 2.7.10.1)(VEGFR-1) (Vascular
permeability factor receptor) (Tyrosine-proteinkinase receptor FLT) (Flt-1)
(Tyrosine-protein kinase FRT) (Fms-liketyrosine kinase 1). 0 0
11 11 VGFR1_1206_1218 GSSDDVRYVNAFK [1213] P17948 Vascular
endothelial growth factor receptor 1 precursor (EC 2.7.10.1)(VEGFR-1) (Vascular
permeability factor receptor) (Tyrosine-proteinkinase receptor FLT) (Flt-1)
(Tyrosine-protein kinase FRT) (Fms-liketyrosine kinase 1). 0 0
11 12 VGFR1_1235_1247 ATSMFDDYQGDSS [1242] P17948 Vascular
endothelial growth factor receptor 1 precursor (EC 2.7.10.1)(VEGFR-1) (Vascular
permeability factor receptor) (Tyrosine-proteinkinase receptor FLT) (Flt-1)
(Tyrosine-protein kinase FRT) (Fms-liketyrosine kinase 1). 0 0
12 1 VGFR1_1320_1332_C1320S/C1321S SSSPPPDYNSVVL [1327] P17948
Vascular endothelial growth factor receptor 1 precursor (EC 2.7.10.1)(VEGFR-1)
(Vascular permeability factor receptor) (Tyrosine-proteinkinase receptor FLT)
(Flt-1) (Tyrosine-protein kinase FRT) (Fms-liketyrosine kinase 1). 0 0
12 2 VGFR1_1326_1338 DYNSVVLYSTPPI [1327, 1333] P17948
Vascular endothelial growth factor receptor 1 precursor (EC 2.7.10.1)(VEGFR-1)
(Vascular permeability factor receptor) (Tyrosine-proteinkinase receptor FLT)
(Flt-1) (Tyrosine-protein kinase FRT) (Fms-liketyrosine kinase 1). 0 0
12 3 VGFR2_1046_1058 DFGLARDIYKDPD [1054] P35968 Vascular
endothelial growth factor receptor 2 precursor (EC 2.7.10.1)(VEGFR-2) (Kinase
insert domain receptor) (Protein-tyrosine kinasereceptor Flk-1) (CD309
antigen). 0 0
12 4 VGFR2_1052_1064 DIYKDPDYVRKGD [1054, 1059] P35968
Vascular endothelial growth factor receptor 2 precursor (EC 2.7.10.1)(VEGFR-2)
(Kinase insert domain receptor) (Protein-tyrosine kinasereceptor Flk-1) (CD309
antigen). 0 0
12 5 VGFR2_1168_1180 AQQDGKDYIVLPI [1175] P35968 Vascular
endothelial growth factor receptor 2 precursor (EC 2.7.10.1)(VEGFR-2) (Kinase
insert domain receptor) (Protein-tyrosine kinasereceptor Flk-1) (CD309
antigen). 0 0
12 6 VGFR2_1207_1219_C1208S VSDPKFHYDNTAG [1214] P35968
Vascular endothelial growth factor receptor 2 precursor (EC 2.7.10.1)(VEGFR-2)
(Kinase insert domain receptor) (Protein-tyrosine kinasereceptor Flk-1) (CD309
antigen). 0 0
12 7 VGFR2_944_956 RFRQGKDYVGAIP [951] P35968 Vascular
endothelial growth factor receptor 2 precursor (EC 2.7.10.1)(VEGFR-2) (Kinase
insert domain receptor) (Protein-tyrosine kinasereceptor Flk-1) (CD309
antigen). 0 0
12 8 VGFR2_989_1001 EEAPEDLYKDFLT [996] P35968 Vascular
endothelial growth factor receptor 2 precursor (EC 2.7.10.1)(VEGFR-2) (Kinase
insert domain receptor) (Protein-tyrosine kinasereceptor Flk-1) (CD309
antigen). 0 0
12 9 VGFR3_1061_1073 DIYKDPDYVRKGS [1063, 1068] P35916
Vascular endothelial growth factor receptor 3 precursor (EC 2.7.10.1)(VEGFR-3)
(Tyrosine-protein kinase receptor FLT4). 0 0
12 10 VINC_815_827 KSFLDSGYRILGA [822] P18206 Vinculin
(Metavinculin). 0 0
12 11 ZAP70_485_497 ALGADDSYYTARS [492, 493] P43403
Tyrosine-protein kinase ZAP-70 (EC 2.7.10.2) (70 kDa zeta-associatedprotein)
(Syk-related tyrosine kinase). 0 0
12 12 ZBT16_621_633 LRTHNGASPYQCT [630] Q05516 Zinc finger and
BTB domain-containing protein 16 (Zinc finger proteinPLZF) (Promyelocytic
leukemia zinc finger protein) (Zinc fingerprotein 145). 0 0# meta data for data partition Spot.txt written by ibis::tafel::write on Mon Nov 09 16:56:33 2009 BEGIN HEADER Name = Spot.txt Description = Data partition constructed with ibis::tablex interface on Mon Nov 09 16:56:33 2009 with 9 columns and 152 rows Number_of_rows = 152 Number_of_columns = 9 Timestamp = 1257782193 END HEADER Begin Column name = Description data_type = CATEGORY End Column Begin Column name = ID data_type = CATEGORY End Column Begin Column name = Sequence data_type = CATEGORY End Column Begin Column name = spotCol data_type = FLOAT End Column Begin Column name = spotRow data_type = FLOAT End Column Begin Column name = Tyr data_type = CATEGORY End Column Begin Column name = UniprotAccession data_type = CATEGORY End Column Begin Column name = Xoff data_type = FLOAT End Column Begin Column name = Yoff data_type = FLOAT End Column
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