Thanks John, Both of those solutions worked like a charm!
Best, -eric --------------------------------------------------- Eric Lyons, Ph.D. Comparative Genomics http://genomevolution.org Assistant Professor School of Plant Sciences iPlant Collaborative Member Bio5 Institute, University of Arizona, Tucson Phone: 520-626-5070 Email: [email protected] SkypeID: ericlyons On Dec 13, 2012, at 1:00 PM, [email protected] wrote: > Send FastBit-users mailing list submissions to > [email protected] > > To subscribe or unsubscribe via the World Wide Web, visit > https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users > or, via email, send a message with subject or body 'help' to > [email protected] > > You can reach the person managing the list at > [email protected] > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of FastBit-users digest..." > > > Today's Topics: > > 1. Re: Inconsistent run times of ibis (K. John Wu) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Wed, 12 Dec 2012 14:12:19 -0800 > From: "K. John Wu" <[email protected]> > Subject: Re: [FastBit-users] Inconsistent run times of ibis > To: FastBit Users <[email protected]> > Message-ID: <[email protected]> > Content-Type: text/plain; charset=ISO-8859-1 > > Please either use version 1.3.2 > <https://codeforge.lbl.gov/frs/download.php/395/fastbit-ibis1.3.2.tar.gz> > or use the latest source code from the SVN. You can access the source > code with > > svn checkout https://codeforge.lbl.gov/anonscm/fastbit > > There are some changes to the code involving other aspects which > require some additional testing right now. As soon as that is done, > we will release a tar ball. > > Thanks. > > John > > > > On 12/12/12 11:07 AM, preeti gupta wrote: >> I guess John replied about it in his previous threads and released a >> patch too. >> >> On Wed, Dec 12, 2012 at 11:05 AM, Eric Lyons <[email protected] >> <mailto:[email protected]>> wrote: >> >> Hi, >> >> I'm wondering if anyone has seen this problem where running ibis >> (no options) yields very different run times (no load on the system): >> >> elyons@XXX (~/src/fastbit-ibis1.3.4/bin) $ time ./ibis >> >> FastBit ibis1.3.4 >> >> List of options for ./ibis >> ... >> NOTE: the output file stores the results selected by queries, >> the log file is for the rest of the messages such error >> messages and debug information >> >> >> real0m0.289s >> user0m0.000s >> sys0m0.000s >> >> elyons@XXX (~/src/fastbit-ibis1.3.4/bin) $ time ./ibis >> >> FastBit ibis1.3.4 >> >> List of options for ./ibis >> ... >> NOTE: the output file stores the results selected by queries, >> the log file is for the rest of the messages such error >> messages and debug information >> >> >> real0m7.556s >> user0m0.000s >> sys0m0.000s >> >> >> I've tried this one two different systems (both running Ubuntu) >> and will two versions of ibis (1.3.3 and 1.3.4). The wait time >> can be up to 15 seconds. Any ideas? >> >> Thanks, >> -eric >> >> --------------------------------------------------- >> Eric Lyons, Ph.D. >> Comparative Genomics >> http://genomevolution.org >> >> Assistant Professor >> School of Plant Sciences >> iPlant Collaborative Member >> Bio5 Institute, University of Arizona, Tucson >> >> Phone: 520-626-5070 <tel:520-626-5070> >> Email: [email protected] <mailto:[email protected]> >> SkypeID: ericlyons >> >> >> _______________________________________________ >> FastBit-users mailing list >> [email protected] <mailto:[email protected]> >> https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users >> >> >> >> >> _______________________________________________ >> FastBit-users mailing list >> [email protected] >> https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users >> > > > ------------------------------ > > _______________________________________________ > FastBit-users mailing list > [email protected] > https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users > > > End of FastBit-users Digest, Vol 64, Issue 5 > ********************************************
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