Hi John I appended the make and configure - process "logs" .
Mike 2014-07-28 16:58 GMT+02:00 K. John Wu <[email protected]>: > Hi, Mike, > > Thanks for the report of compilation problem. Would it be possible > for you to capture the whole error message from make? The lines you > included shows something about stl_map.h, which is a standard header > file. It would be more useful to me to see where in FastBit code this > error originates. > > John > > > On 7/28/14 5:23 AM, Mike Carter wrote: > > Hi John, > > > > thank you for your help. I tried it with following command from the new > > svn version (revision 740) > > > > ./configure --with-java=/usr/java/jdk1.8.0_11 > > ... > > checking if /usr/java/jdk1.8.0_11/bin/java works... yes > > checking jni.h usability... yes > > checking jni.h presence... yes > > checking for jni.h... yes > > ... > > > > After the configuration I got an error by using make > > > > > /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_map.h:581: > > note: typename std::_Rb_tree<_Key, std::pair<const _Key, > > _Tp>, std::_Select1st<std::pair<const _Key, _Tp> >, _Compare, typename > > _Alloc::rebind<std::pair<const _Key, _Tp> >::other>::size_type > > std::map<_Key, _Tp, _Compare, _Alloc>::erase(const _Key&) [with _Key = > > const char*, _Tp = ibis::part*, _Compare = ibis::lessi, _Alloc = > > std::allocator<std::pair<const char* const, ibis::part*> >] > > > /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_map.h:596: > > note: void std::map<_Key, _Tp, _Compare, > > _Alloc>::erase(typename std::_Rb_tree<_Key, std::pair<const _Key, _Tp>, > > std::_Select1st<std::pair<const _Key, _Tp> >, _Compare, typename > > _Alloc::rebind<std::pair<const _Key, _Tp> >::other>::iterator, typename > > std::_Rb_tree<_Key, std::pair<const _Key, _Tp>, > > std::_Select1st<std::pair<const _Key, _Tp> >, _Compare, typename > > _Alloc::rebind<std::pair<const _Key, _Tp> >::other>::iterator) [with > _Key = > > const char*, _Tp = ibis::part*, _Compare = ibis::lessi, _Alloc = > > std::allocator<std::pair<const char* const, ibis::part*> >] > > make[2]: *** [capi.lo] Error 1 > > make[2]: Leaving directory `/root/fastbit/src' > > make[1]: *** [all] Error 2 > > make[1]: Leaving directory `/root/fastbit/src' > > make: *** [all-recursive] Error 1 > > > > > > > > Mike > > > > > > > > > > > > > > 2014-07-27 9:43 GMT+02:00 K. John Wu <[email protected]>: > > > >> Hi, Mike, > >> > >> Thanks for your interest in our work. There was a problem in > >> detecting whether you javac could be used safely in configure.ac. > >> This problem should be fixed in the code from the SVN archive. Would > >> you mind check out the source code with > >> > >> svn checkout https://codeforge.lbl.gov/anonscm/fastbit > >> > >> and give it another try. > >> > >> One thing to watch for is that when you run configure script (for > >> example, through runconf), you will notice something like > >> > >> checking for jni.h... yes > >> > >> If you don't see this like, it means that the configure script has not > >> figured out how to deal with JNI stuff on your system. In which case, > >> you might tell it where to find you JDK installation by giving the > >> following option to the configure script > >> > >> --with-java=path-to-jdk > >> > >> Hope this helps. > >> > >> John > >> > >> > >> > >> > >> On 7/18/14 6:50 AM, Mike Carter wrote: > >>> Hello everybody! > >>> > >>> After installing Fastbit successfully on CentOS, I tried to run the > milky > >>> example by using the command [java milky ../tests/tmp/t1 "a>10 and c > >>> between 50 and 70"]. > >>> > >>> [root@vm001 java]# java milky ../tests/tmp/t1 "a>10 and c between 50 > >> and 70" > >>> Exception in thread "main" java.lang.UnsatisfiedLinkError: no > fastbitjni > >> in > >>> java.library.path > >>> at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1857) > >>> at java.lang.Runtime.loadLibrary0(Runtime.java:870) > >>> at java.lang.System.loadLibrary(System.java:1119) > >>> at gov.lbl.fastbit.FastBit.<clinit>(FastBit.java:188) > >>> at milky.main(milky.java:69) > >>> > >>> So I was looking for the file "libfastbitjni.so", but I couldn't find > it. > >>> It doesn't exist in the folder fastbit/src/.libs nor in the folder > >>> /usr/local/lib (the java.library.path). > >>> In the documentation I found the following command to produce the > >>> libfastbitjni.so. I'm not sure how to use it to produce > libfastbitjni.so. > >>> Additionally, the libfastbitjni.so doesn't exist in the folder > src/.libs, > >>> which is a presumption to run this command. > >>> > >>> > >>> gcc -O -shared -o libfastbitjni.so -Wl,-soname,libfastbitjni.so \ > >>> -I/export/home/jdk1.2/include \ > >>> -I/export/home/jdk1.2/include/linux FastBit.c \ > >>> ..\src\libfastbit.lo -lm > >>> > >>> Any hints and advices? What I am doing wrong? I unpacket > >>> fastbit-ibis1.3.8.tar.gz and first I executed. Ibis and ardea works, > but > >> I > >>> need to access fastbit through Java. > >>> > >>> ./configure > >>> gmake -j 3 all > >>> make install > >>> > >>> Thank you! > >>> Mike Carter > >>> > >>> > >>> > >>> _______________________________________________ > >>> FastBit-users mailing list > >>> [email protected] > >>> https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users > >>> > >> _______________________________________________ > >> FastBit-users mailing list > >> [email protected] > >> https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users > >> > > > > > > > > _______________________________________________ > > FastBit-users mailing list > > [email protected] > > https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users > > > _______________________________________________ > FastBit-users mailing list > [email protected] > https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users >
[root@vm001 fastbit]# make Making all in src make[1]: Entering directory `/root/fastbit/src' make all-am make[2]: Entering directory `/root/fastbit/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT part.lo -MD -MP -MF .deps/part.Tpo -c -o part.lo part.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT part.lo -MD -MP -MF .deps/part.Tpo -c part.cpp -fPIC -DPIC -o .libs/part.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT part.lo -MD -MP -MF .deps/part.Tpo -c part.cpp -o part.o >/dev/null 2>&1 mv -f .deps/part.Tpo .deps/part.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT bordm.lo -MD -MP -MF .deps/bordm.Tpo -c -o bordm.lo bordm.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT bordm.lo -MD -MP -MF .deps/bordm.Tpo -c bordm.cpp -fPIC -DPIC -o .libs/bordm.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT bordm.lo -MD -MP -MF .deps/bordm.Tpo -c bordm.cpp -o bordm.o >/dev/null 2>&1 mv -f .deps/bordm.Tpo .deps/bordm.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT bord.lo -MD -MP -MF .deps/bord.Tpo -c -o bord.lo bord.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT bord.lo -MD -MP -MF .deps/bord.Tpo -c bord.cpp -fPIC -DPIC -o .libs/bord.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT bord.lo -MD -MP -MF .deps/bord.Tpo -c bord.cpp -o bord.o >/dev/null 2>&1 mv -f .deps/bord.Tpo .deps/bord.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT ibin.lo -MD -MP -MF .deps/ibin.Tpo -c -o ibin.lo ibin.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT ibin.lo -MD -MP -MF .deps/ibin.Tpo -c ibin.cpp -fPIC -DPIC -o .libs/ibin.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT ibin.lo -MD -MP -MF .deps/ibin.Tpo -c ibin.cpp -o ibin.o >/dev/null 2>&1 mv -f .deps/ibin.Tpo .deps/ibin.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT column.lo -MD -MP -MF .deps/column.Tpo -c -o column.lo column.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT column.lo -MD -MP -MF .deps/column.Tpo -c column.cpp -fPIC -DPIC -o .libs/column.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT column.lo -MD -MP -MF .deps/column.Tpo -c column.cpp -o column.o >/dev/null 2>&1 mv -f .deps/column.Tpo .deps/column.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT index.lo -MD -MP -MF .deps/index.Tpo -c -o index.lo index.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT index.lo -MD -MP -MF .deps/index.Tpo -c index.cpp -fPIC -DPIC -o .libs/index.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT index.lo -MD -MP -MF .deps/index.Tpo -c index.cpp -o index.o >/dev/null 2>&1 mv -f .deps/index.Tpo .deps/index.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT array_t.lo -MD -MP -MF .deps/array_t.Tpo -c -o array_t.lo array_t.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT array_t.lo -MD -MP -MF .deps/array_t.Tpo -c array_t.cpp -fPIC -DPIC -o .libs/array_t.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT array_t.lo -MD -MP -MF .deps/array_t.Tpo -c array_t.cpp -o array_t.o >/dev/null 2>&1 mv -f .deps/array_t.Tpo .deps/array_t.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT parth3dw.lo -MD -MP -MF .deps/parth3dw.Tpo -c -o parth3dw.lo parth3dw.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT parth3dw.lo -MD -MP -MF .deps/parth3dw.Tpo -c parth3dw.cpp -fPIC -DPIC -o .libs/parth3dw.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT parth3dw.lo -MD -MP -MF .deps/parth3dw.Tpo -c parth3dw.cpp -o parth3dw.o >/dev/null 2>&1 mv -f .deps/parth3dw.Tpo .deps/parth3dw.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT parth3da.lo -MD -MP -MF .deps/parth3da.Tpo -c -o parth3da.lo parth3da.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT parth3da.lo -MD -MP -MF .deps/parth3da.Tpo -c parth3da.cpp -fPIC -DPIC -o .libs/parth3da.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT parth3da.lo -MD -MP -MF .deps/parth3da.Tpo -c parth3da.cpp -o parth3da.o >/dev/null 2>&1 mv -f .deps/parth3da.Tpo .deps/parth3da.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT parth3db.lo -MD -MP -MF .deps/parth3db.Tpo -c -o parth3db.lo parth3db.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT parth3db.lo -MD -MP -MF .deps/parth3db.Tpo -c parth3db.cpp -fPIC -DPIC -o .libs/parth3db.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT parth3db.lo -MD -MP -MF .deps/parth3db.Tpo -c parth3db.cpp -o parth3db.o >/dev/null 2>&1 mv -f .deps/parth3db.Tpo .deps/parth3db.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT parth2d.lo -MD -MP -MF .deps/parth2d.Tpo -c -o parth2d.lo parth2d.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT parth2d.lo -MD -MP -MF .deps/parth2d.Tpo -c parth2d.cpp -fPIC -DPIC -o .libs/parth2d.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT parth2d.lo -MD -MP -MF .deps/parth2d.Tpo -c parth2d.cpp -o parth2d.o >/dev/null 2>&1 mv -f .deps/parth2d.Tpo .deps/parth2d.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT parth3d.lo -MD -MP -MF .deps/parth3d.Tpo -c -o parth3d.lo parth3d.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT parth3d.lo -MD -MP -MF .deps/parth3d.Tpo -c parth3d.cpp -fPIC -DPIC -o .libs/parth3d.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT parth3d.lo -MD -MP -MF .deps/parth3d.Tpo -c parth3d.cpp -o parth3d.o >/dev/null 2>&1 mv -f .deps/parth3d.Tpo .deps/parth3d.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT meshQuery.lo -MD -MP -MF .deps/meshQuery.Tpo -c -o meshQuery.lo meshQuery.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT meshQuery.lo -MD -MP -MF .deps/meshQuery.Tpo -c meshQuery.cpp -fPIC -DPIC -o .libs/meshQuery.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT meshQuery.lo -MD -MP -MF .deps/meshQuery.Tpo -c meshQuery.cpp -o meshQuery.o >/dev/null 2>&1 mv -f .deps/meshQuery.Tpo .deps/meshQuery.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT query.lo -MD -MP -MF .deps/query.Tpo -c -o query.lo query.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT query.lo -MD -MP -MF .deps/query.Tpo -c query.cpp -fPIC -DPIC -o .libs/query.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT query.lo -MD -MP -MF .deps/query.Tpo -c query.cpp -o query.o >/dev/null 2>&1 mv -f .deps/query.Tpo .deps/query.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT colValues.lo -MD -MP -MF .deps/colValues.Tpo -c -o colValues.lo colValues.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT colValues.lo -MD -MP -MF .deps/colValues.Tpo -c colValues.cpp -fPIC -DPIC -o .libs/colValues.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT colValues.lo -MD -MP -MF .deps/colValues.Tpo -c colValues.cpp -o colValues.o >/dev/null 2>&1 mv -f .deps/colValues.Tpo .deps/colValues.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT bitvector.lo -MD -MP -MF .deps/bitvector.Tpo -c -o bitvector.lo bitvector.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT bitvector.lo -MD -MP -MF .deps/bitvector.Tpo -c bitvector.cpp -fPIC -DPIC -o .libs/bitvector.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT bitvector.lo -MD -MP -MF .deps/bitvector.Tpo -c bitvector.cpp -o bitvector.o >/dev/null 2>&1 mv -f .deps/bitvector.Tpo .deps/bitvector.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT islice.lo -MD -MP -MF .deps/islice.Tpo -c -o islice.lo islice.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT islice.lo -MD -MP -MF .deps/islice.Tpo -c islice.cpp -fPIC -DPIC -o .libs/islice.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT islice.lo -MD -MP -MF .deps/islice.Tpo -c islice.cpp -o islice.o >/dev/null 2>&1 mv -f .deps/islice.Tpo .deps/islice.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT ixambit.lo -MD -MP -MF .deps/ixambit.Tpo -c -o ixambit.lo ixambit.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT ixambit.lo -MD -MP -MF .deps/ixambit.Tpo -c ixambit.cpp -fPIC -DPIC -o .libs/ixambit.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT ixambit.lo -MD -MP -MF .deps/ixambit.Tpo -c ixambit.cpp -o ixambit.o >/dev/null 2>&1 mv -f .deps/ixambit.Tpo .deps/ixambit.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT parth.lo -MD -MP -MF .deps/parth.Tpo -c -o parth.lo parth.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT parth.lo -MD -MP -MF .deps/parth.Tpo -c parth.cpp -fPIC -DPIC -o .libs/parth.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT parth.lo -MD -MP -MF .deps/parth.Tpo -c parth.cpp -o parth.o >/dev/null 2>&1 mv -f .deps/parth.Tpo .deps/parth.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT mensa.lo -MD -MP -MF .deps/mensa.Tpo -c -o mensa.lo mensa.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT mensa.lo -MD -MP -MF .deps/mensa.Tpo -c mensa.cpp -fPIC -DPIC -o .libs/mensa.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT mensa.lo -MD -MP -MF .deps/mensa.Tpo -c mensa.cpp -o mensa.o >/dev/null 2>&1 mv -f .deps/mensa.Tpo .deps/mensa.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT tafel.lo -MD -MP -MF .deps/tafel.Tpo -c -o tafel.lo tafel.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT tafel.lo -MD -MP -MF .deps/tafel.Tpo -c tafel.cpp -fPIC -DPIC -o .libs/tafel.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT tafel.lo -MD -MP -MF .deps/tafel.Tpo -c tafel.cpp -o tafel.o >/dev/null 2>&1 mv -f .deps/tafel.Tpo .deps/tafel.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT party.lo -MD -MP -MF .deps/party.Tpo -c -o party.lo party.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT party.lo -MD -MP -MF .deps/party.Tpo -c party.cpp -fPIC -DPIC -o .libs/party.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT party.lo -MD -MP -MF .deps/party.Tpo -c party.cpp -o party.o >/dev/null 2>&1 mv -f .deps/party.Tpo .deps/party.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT qExpr.lo -MD -MP -MF .deps/qExpr.Tpo -c -o qExpr.lo qExpr.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT qExpr.lo -MD -MP -MF .deps/qExpr.Tpo -c qExpr.cpp -fPIC -DPIC -o .libs/qExpr.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT qExpr.lo -MD -MP -MF .deps/qExpr.Tpo -c qExpr.cpp -o qExpr.o >/dev/null 2>&1 mv -f .deps/qExpr.Tpo .deps/qExpr.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT utilidor.lo -MD -MP -MF .deps/utilidor.Tpo -c -o utilidor.lo utilidor.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT utilidor.lo -MD -MP -MF .deps/utilidor.Tpo -c utilidor.cpp -fPIC -DPIC -o .libs/utilidor.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT utilidor.lo -MD -MP -MF .deps/utilidor.Tpo -c utilidor.cpp -o utilidor.o >/dev/null 2>&1 mv -f .deps/utilidor.Tpo .deps/utilidor.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT bitvector64.lo -MD -MP -MF .deps/bitvector64.Tpo -c -o bitvector64.lo bitvector64.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT bitvector64.lo -MD -MP -MF .deps/bitvector64.Tpo -c bitvector64.cpp -fPIC -DPIC -o .libs/bitvector64.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT bitvector64.lo -MD -MP -MF .deps/bitvector64.Tpo -c bitvector64.cpp -o bitvector64.o >/dev/null 2>&1 mv -f .deps/bitvector64.Tpo .deps/bitvector64.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT irange.lo -MD -MP -MF .deps/irange.Tpo -c -o irange.lo irange.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT irange.lo -MD -MP -MF .deps/irange.Tpo -c irange.cpp -fPIC -DPIC -o .libs/irange.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT irange.lo -MD -MP -MF .deps/irange.Tpo -c irange.cpp -o irange.o >/dev/null 2>&1 mv -f .deps/irange.Tpo .deps/irange.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT category.lo -MD -MP -MF .deps/category.Tpo -c -o category.lo category.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT category.lo -MD -MP -MF .deps/category.Tpo -c category.cpp -fPIC -DPIC -o .libs/category.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT category.lo -MD -MP -MF .deps/category.Tpo -c category.cpp -o category.o >/dev/null 2>&1 mv -f .deps/category.Tpo .deps/category.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT iroster.lo -MD -MP -MF .deps/iroster.Tpo -c -o iroster.lo iroster.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT iroster.lo -MD -MP -MF .deps/iroster.Tpo -c iroster.cpp -fPIC -DPIC -o .libs/iroster.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT iroster.lo -MD -MP -MF .deps/iroster.Tpo -c iroster.cpp -o iroster.o >/dev/null 2>&1 mv -f .deps/iroster.Tpo .deps/iroster.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT irelic.lo -MD -MP -MF .deps/irelic.Tpo -c -o irelic.lo irelic.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT irelic.lo -MD -MP -MF .deps/irelic.Tpo -c irelic.cpp -fPIC -DPIC -o .libs/irelic.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT irelic.lo -MD -MP -MF .deps/irelic.Tpo -c irelic.cpp -o irelic.o >/dev/null 2>&1 mv -f .deps/irelic.Tpo .deps/irelic.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT ixpack.lo -MD -MP -MF .deps/ixpack.Tpo -c -o ixpack.lo ixpack.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT ixpack.lo -MD -MP -MF .deps/ixpack.Tpo -c ixpack.cpp -fPIC -DPIC -o .libs/ixpack.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT ixpack.lo -MD -MP -MF .deps/ixpack.Tpo -c ixpack.cpp -o ixpack.o >/dev/null 2>&1 mv -f .deps/ixpack.Tpo .deps/ixpack.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT fileManager.lo -MD -MP -MF .deps/fileManager.Tpo -c -o fileManager.lo fileManager.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT fileManager.lo -MD -MP -MF .deps/fileManager.Tpo -c fileManager.cpp -fPIC -DPIC -o .libs/fileManager.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT fileManager.lo -MD -MP -MF .deps/fileManager.Tpo -c fileManager.cpp -o fileManager.o >/dev/null 2>&1 mv -f .deps/fileManager.Tpo .deps/fileManager.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT filter.lo -MD -MP -MF .deps/filter.Tpo -c -o filter.lo filter.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT filter.lo -MD -MP -MF .deps/filter.Tpo -c filter.cpp -fPIC -DPIC -o .libs/filter.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT filter.lo -MD -MP -MF .deps/filter.Tpo -c filter.cpp -o filter.o >/dev/null 2>&1 mv -f .deps/filter.Tpo .deps/filter.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT bundle.lo -MD -MP -MF .deps/bundle.Tpo -c -o bundle.lo bundle.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT bundle.lo -MD -MP -MF .deps/bundle.Tpo -c bundle.cpp -fPIC -DPIC -o .libs/bundle.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT bundle.lo -MD -MP -MF .deps/bundle.Tpo -c bundle.cpp -o bundle.o >/dev/null 2>&1 mv -f .deps/bundle.Tpo .deps/bundle.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT capi.lo -MD -MP -MF .deps/capi.Tpo -c -o capi.lo capi.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -g -O2 -std=c++0x -I/usr/java/jdk1.8.0_11/include -I/usr/java/jdk1.8.0_11/include/linux -MT capi.lo -MD -MP -MF .deps/capi.Tpo -c capi.cpp -fPIC -DPIC -o .libs/capi.o capi.cpp: In member function 'ibis::part* fastbit_part_list::find(const char*)': capi.cpp:134: error: no matching function for call to 'std::map<const char*, ibis::part*, ibis::lessi, std::allocator<std::pair<const char* const, ibis::part*> > >::erase(std::_Rb_tree_const_iterator<std::pair<const char* const, ibis::part*> >&)' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_map.h:566: note: candidates are: void std::map<_Key, _Tp, _Compare, _Alloc>::erase(typename std::_Rb_tree<_Key, std::pair<const _Key, _Tp>, std::_Select1st<std::pair<const _Key, _Tp> >, _Compare, typename _Alloc::rebind<std::pair<const _Key, _Tp> >::other>::iterator) [with _Key = const char*, _Tp = ibis::part*, _Compare = ibis::lessi, _Alloc = std::allocator<std::pair<const char* const, ibis::part*> >] /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_map.h:581: note: typename std::_Rb_tree<_Key, std::pair<const _Key, _Tp>, std::_Select1st<std::pair<const _Key, _Tp> >, _Compare, typename _Alloc::rebind<std::pair<const _Key, _Tp> >::other>::size_type std::map<_Key, _Tp, _Compare, _Alloc>::erase(const _Key&) [with _Key = const char*, _Tp = ibis::part*, _Compare = ibis::lessi, _Alloc = std::allocator<std::pair<const char* const, ibis::part*> >] /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_map.h:596: note: void std::map<_Key, _Tp, _Compare, _Alloc>::erase(typename std::_Rb_tree<_Key, std::pair<const _Key, _Tp>, std::_Select1st<std::pair<const _Key, _Tp> >, _Compare, typename _Alloc::rebind<std::pair<const _Key, _Tp> >::other>::iterator, typename std::_Rb_tree<_Key, std::pair<const _Key, _Tp>, std::_Select1st<std::pair<const _Key, _Tp> >, _Compare, typename _Alloc::rebind<std::pair<const _Key, _Tp> >::other>::iterator) [with _Key = const char*, _Tp = ibis::part*, _Compare = ibis::lessi, _Alloc = std::allocator<std::pair<const char* const, ibis::part*> >] make[2]: *** [capi.lo] Error 1 make[2]: Leaving directory `/root/fastbit/src' make[1]: *** [all] Error 2 make[1]: Leaving directory `/root/fastbit/src' make: *** [all-recursive] Error 1
[root@vm001 fastbit]# ./configure --with-java=/usr/java/jdk1.8.0_11 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking whether make sets $(MAKE)... (cached) yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1966080 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for log10 in -lm... yes checking for clock_gettime in -lrt... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for sys/types.h... (cached) yes checking for vprintf... yes checking for _doprnt... no checking for gettimeofday... yes checking for mkdir... yes checking whether to enable debugging (-g)... checking whether to enable extra optimization... no checking for c++11... no checking for c++0x... yes checking for the presence of getpwuid... yes checking for the presence of getpwuid_r... yes checking for quiet_NaN... yes, use quiet_NaN() as null values checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... yes checking if more special flags are required for pthreads... no checking if math.h defines nextafter... yes checking if compiler supports __sync_add_and_fetch for 32-bit integers... yes checking if compiler supports __sync_add_and_fetch for 64-bit integers... yes checking if the default FlexLexer.h defines yywrap... yes checking if /usr/java/jdk1.8.0_11/bin/javac works... yes checking for uudecode... no checking if /usr/java/jdk1.8.0_11/bin/java works... yes checking jni.h usability... yes checking jni.h presence... yes checking for jni.h... yes checking whether to build java native interface... yes checking whether to configure Makefiles in contrib... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating examples/Makefile config.status: creating tests/Makefile config.status: creating java/Makefile config.status: creating contrib/Makefile config.status: creating contrib/fbmerge/Makefile config.status: creating tests/scripts/fastbit-config config.status: creating src/fastbit-config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing FastBit-prefix commands
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