Eddie
I sent this out a couple of weeks ago when there were problems with
SourceForge mail. Not sure if you got it? Like Joe, we initially ended
up with an empty ri!
Richard
-----Original Message-----
From: Richard Green
Sent: 19 September 2008 16:53
To: 'Edwin Shin'; [email protected]
Cc: Simon W Lamb; Chris L Awre
Subject: RE: [Fedora-commons-developers] Rebuilding the ResourceIndex in
a 2.2.3 World
Eddie
Did this ever get sorted? We hit the same problem today and had to
solve it by hand-editing the 'created' date on a number of objects -
including demo:itemThree - in order to do a successful rebuild.
Richard
___________________________________________________________________
Richard Green
Manager, RepoMMan, RIDIR and REMAP Projects
e-Services Integration Group
www.hull.ac.uk/esig/repomman
www.hull.ac.uk/ridir
www.hull.ac.uk/remap
http://edocs.hull.ac.uk
-----Original Message-----
From: [EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED] On
Behalf Of Edwin Shin
Sent: 08 August 2008 22:18
To: [email protected]
Subject: Re: [Fedora-commons-developers] Rebuilding the ResourceIndex in
a 2.2.3 World
This is a known bug--I noted on the user's list about a week ago that I
was able to reproduce it against the version of Trippi + Kowari bundled
with Fedora 2.2.2 (which hasn't changed for 2.2.3).
Unfortunately, I haven't had a chance to run it down further yet (i.e.
if it's a problem in Trippi or Kowari). I'm traveling for the next week
so I'm not sure if I'll be able to get to it until I'm back.
Eddie
On 08/08/2008 03:56 PM, Joe Liversedge is rumored to have said:
> Hey everyone,
>
> I haven't tried this with a straight-up 2.2.3 installation, but I've
> seen a problem upgrading from earlier versions (2.1.1, 2.2.1) and
doing
> a Resource Index rebuild on the newly-upgraded 2.2.3. This is true for
> at least two other installations. It looks something like:
>
> INFO [main] (KowariConnector.java:281) - Connector closing...
> INFO [main] (KowariSession.java:310) - Closed session.
> INFO [main] (ConcurrentTriplestoreWriter.java:327) - Closing...
> INFO [main] (SPTypedLiteralRegistry.java:211) - Registered
> SPTypedLiteralFactory for: [http://www.w3.org/2001/XMLSchema#string]
(id:1)
> INFO [main] (SPTypedLiteralRegistry.java:211) - Registered
> SPTypedLiteralFactory for: [http://www.w3.org/2001/XMLSchema#short,
> http://www.w3.org/2001/XMLSchema#integer,
> http://www.w3.org/2001/XMLSchema#nonNegativeInteger,
> http://www.w3.org/2001/XMLSchema#long,
> http://www.w3.org/2001/XMLSchema#negativeInteger,
> http://www.w3.org/2001/XMLSchema#unsignedLong,
> http://www.w3.org/2001/XMLSchema#unsignedInt,
> http://www.w3.org/2001/XMLSchema#int,
> http://www.w3.org/2001/XMLSchema#byte,
> http://www.w3.org/2001/XMLSchema#unsignedShort,
> http://www.w3.org/2001/XMLSchema#decimal,
> http://www.w3.org/2001/XMLSchema#nonPositiveInteger,
> http://www.w3.org/2001/XMLSchema#unsignedByte,
> http://www.w3.org/2001/XMLSchema#positiveInteger] (id:2)
> INFO [main] (SPTypedLiteralRegistry.java:211) - Registered
> SPTypedLiteralFactory for: [http://www.w3.org/2001/XMLSchema#float]
(id:3)
> INFO [main] (SPTypedLiteralRegistry.java:211) - Registered
> SPTypedLiteralFactory for: [http://www.w3.org/2001/XMLSchema#double]
(id:4)
> INFO [main] (SPTypedLiteralRegistry.java:211) - Registered
> SPTypedLiteralFactory for: [http://www.w3.org/2001/XMLSchema#date]
(id:5)
> INFO [main] (SPTypedLiteralRegistry.java:211) - Registered
> SPTypedLiteralFactory for: [http://www.w3.org/2001/XMLSchema#dateTime]
> (id:6)
> org.kowari.query.QueryException: Couldn't insert statement
> [info:fedora/demo:DualResImageCollection/SERVICE-PROFILE,
> info:fedora/fedora-system:def/view#lastModifiedDate,
> 2004-12-17T15:32:11Z] into rmi://localhost/fedora#ri
> at
>
org.kowari.store.AbstractDatabaseSession.insertIntoKowariModel(AbstractD
atabaseSession.java:3630)
>
> at
>
org.kowari.store.AbstractDatabaseSession.insert(AbstractDatabaseSession.
java:1281)
>
> at
> org.trippi.impl.kowari.KowariSession.doTriples(KowariSession.java:142)
> at
org.trippi.impl.kowari.KowariSession.add(KowariSession.java:128)
> at
>
org.trippi.impl.base.MemUpdateBuffer.writeBatch(MemUpdateBuffer.java:199
)
> at
org.trippi.impl.base.MemUpdateBuffer.flush(MemUpdateBuffer.java:123)
> at
>
org.trippi.impl.base.ConcurrentTriplestoreWriter.flushBuffer(ConcurrentT
riplestoreWriter.java:272)
>
> at
>
org.trippi.impl.base.ConcurrentTriplestoreWriter.close(ConcurrentTriples
toreWriter.java:330)
>
> at
> org.trippi.impl.kowari.KowariConnector.close(KowariConnector.java:287)
> at
>
fedora.server.resourceIndex.ResourceIndexImpl.close(ResourceIndexImpl.ja
va:379)
>
> at
>
fedora.server.resourceIndex.ResourceIndexRebuilder.finish(ResourceIndexR
ebuilder.java:193)
>
> at
fedora.server.utilities.rebuild.Rebuild.<init>(Rebuild.java:116)
> at fedora.server.utilities.rebuild.Rebuild.main(Rebuild.java:367)
> Caused by: org.jrdf.graph.GraphException: Couldn't add triple
> at
>
org.kowari.store.PersistentDatabaseGraph.state(PersistentDatabaseGraph.j
ava:382)
>
> at
>
org.kowari.store.PersistentDatabaseGraph.add(PersistentDatabaseGraph.jav
a:224)
>
> at
>
org.kowari.store.AbstractDatabaseSession.insertIntoKowariModel(AbstractD
atabaseSession.java:3625)
>
> ... 12 more
> Caused by: org.kowari.store.StoreException: Couldn't parse
> "2004-12-17T15:32:11Z" as a http://www.w3.org/2001/XMLSchema#dateTime
> at
>
org.kowari.store.AbstractDatabaseSession.getGlobalLiteral(AbstractDataba
seSession.java:937)
>
> at
>
org.kowari.store.AbstractDatabaseSession._localize(AbstractDatabaseSessi
on.java:4018)
>
> at
>
org.kowari.store.AbstractDatabaseSession.localize(AbstractDatabaseSessio
n.java:3914)
>
> at
>
org.kowari.store.PersistentDatabaseGraph.transformStatement(PersistentDa
tabaseGraph.java:1013)
>
> at
>
org.kowari.store.PersistentDatabaseGraph.state(PersistentDatabaseGraph.j
ava:352)
>
> ... 14 more
> Caused by: java.lang.IllegalArgumentException: Cannot parse date:
> 2004-12-17T15:32:11Z.000
> at
>
org.kowari.store.stringpool.xa.SPDateTimeImpl.newInstance(SPDateTimeImpl
.java:127)
>
> at
>
org.kowari.store.stringpool.xa.SPDateTimeFactory.newSPTypedLiteral(SPDat
eTimeFactory.java:79)
>
> at
>
org.kowari.store.stringpool.xa.SPObjectFactoryImpl.newSPTypedLiteral(SPO
bjectFactoryImpl.java:180)
>
> at
>
org.kowari.store.AbstractDatabaseSession.getGlobalLiteral(AbstractDataba
seSession.java:935)
>
> ... 18 more
> WARN [main] (ConcurrentTriplestoreWriter.java:334) - Error flushing
> update buffer while closing Triplestore: org.trippi.TrippiException:
> Error adding triples: org.kowari.query.QueryException: Couldn't insert
> statement [info:fedora/demo:DualResImageCollection/SERVICE-PROFILE,
> info:fedora/fedora-system:def/view#lastModifiedDate,
> 2004-12-17T15:32:11Z] into rmi://localhost/fedora#ri
> INFO [main] (ConfigurableSessionPool.java:218) - Closing all
sessions...
> INFO [main] (KowariSession.java:310) - Closed session.
> INFO [main] (KowariSession.java:310) - Closed session.
> INFO [main] (KowariSession.java:310) - Closed session.
> INFO [main] (KowariSessionFactory.java:253) - Closing underlying
> SessionFactory...
> INFO [main] (AbstractDatabase.java:1062) - Closing
> INFO [main] (AbstractDatabase.java:1090) - Closed
> Finished.
>
> So, the date indicated above indeed looks like
> '2004-12-17T15:32:11.000Z', historically represented.
>
> It initially seemed related to [ 1832564 ] XSD dateTimes can have
> incorrect fractional seconds and so breaking
> fedora/server/utilities/DateUtility such that it preserves the
> explicitly-prohibited fractional-seconds-ending-in-zero again easily
> fixes the problem. Of course, since the intent of the bugfix was
clearly
> correct, we'd like to do it the right way, I just don't know what that
is.
>
> I should also add that the Resource Index is not terribly useful (aka
> empty) after the rebuild completes.
>
> My Kowari in a Nutshell book is on backorder so does anyone have a
> suggestion or insight?
>
> Thanks,
> Joe
>
>
>
>
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