I neglected to mention this is in Fedora version 3.1.
- Bill
On Oct 14, 2010, at 12:26 PM, Bill Parod wrote:
> We have an object that is in a corrupted state. The object is found in the
> objectPaths table but not in doFields. Also its foxml won't parse, apparently
> because it contains a namespace reference which is unresolved, bound to a
> urn. I'll include some detail below. I'm inclined to 'fix' this problem by
> deleting the specific record in the objectPaths table and deleting its foxml
> file in the fedora data subdirectory. Is this a bad idea? Could there be side
> effects to this that I'm not considering?
>
> Thanks very much in advance!
> - Bill
>
>
> Here's a rundown of the object's mysql database profile.
> This object, having pid inu:inm-ead-0001 is:
>
> not in datastreamPaths
> not in dcDates
> not in doFields
> not in doRegistry
> but is in objectPaths:
> mysql> select * from objectPaths where token like 'inu:inm-ead%';
> +-----------+------------------+------------------------------------------------------------------------+
> | tokenDbID | token | path
> |
> +-----------+------------------+------------------------------------------------------------------------+
> | 437940 | inu:inm-ead-0001 |
> /farchive1/fedorastorage/data/objects/2010/1014/10/37/inu_inm-ead-0001 |
> +-----------+------------------+------------------------------------------------------------------------+
>
>
> Searches don't find it:
>
> fedora/search?query=pid~inu:inm-ead-0001&pid=true&maxResults=10&xml=true
> <result> <resultList></resultList></result>
>
> But references to the default dissemination return auth failure rather than
> not found. I'm guessing this is because its attempting to read the object's
> foxml, but it doesn't parse and so can't obtain its policy, so denies access.
>
> fedora/get/inu:inm-ead-0001:
>
> 403 Forbidden
>
> Authorization failed
>
> Doing a viewItemIndex shows the root of the problem:
>
> fedora/get/inu:inm-ead-0001/fedora-system:3/viewItemIndex
>
> 500 Internal Server Error
>
> FOXML IO stream was bad : The prefix "ead" for element "ead:unitid" is not
> bound.
> fedora.server.errors.ObjectIntegrityException: FOXML IO stream was bad : The
> prefix "ead" for element "ead:unitid" is not bound.
> at
> fedora.server.storage.translation.FOXMLDODeserializer.deserialize(FOXMLDODeserializer.java:250)
> at
> fedora.server.storage.translation.DOTranslatorImpl.deserialize(DOTranslatorImpl.java:76)
> at
> fedora.server.storage.translation.DOTranslatorModule.deserialize(DOTranslatorModule.java:127)
> at fedora.server.storage.SimpleDOReader.(SimpleDOReader.java:92)
> at
> fedora.server.storage.DefaultDOManager.getReader(DefaultDOManager.java:659)
> at
> fedora.server.access.DefaultAccess.getDissemination(DefaultAccess.java:223)
> at
> fedora.server.access.FedoraAccessServlet.getDissemination(FedoraAccessServlet.java:730)
> at
> fedora.server.access.FedoraAccessServlet.doGet(FedoraAccessServlet.java:440)
> at javax.servlet.http.HttpServlet.service(HttpServlet.java:690)
> at javax.servlet.http.HttpServlet.service(HttpServlet.java:803)
> at
> org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:269)
> at
> org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188)
> at
> fedora.server.security.servletfilters.FilterSetup.doFilter(FilterSetup.java:235)
> at
> org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:215)
> at
> org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188)
> at
> fedora.server.security.servletfilters.FilterSetup.doFilter(FilterSetup.java:235)
> at
> org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:215)
> at
> org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188)
> at
> fedora.server.security.servletfilters.FilterSetup.doFilter(FilterSetup.java:235)
> at
> org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:215)
> at
> org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188)
> at
> org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:213)
> at
> org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:174)
> at
> org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:525)
> at
> org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127)
> at
> org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:117)
> at
> org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:108)
> at
> org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:174)
> at org.apache.jk.server.JkCoyoteHandler.invoke(JkCoyoteHandler.java:200)
> at org.apache.jk.common.HandlerRequest.invoke(HandlerRequest.java:283)
> at org.apache.jk.common.ChannelSocket.invoke(ChannelSocket.java:773)
> at
> org.apache.jk.common.ChannelSocket.processConnection(ChannelSocket.java:703)
> at
> org.apache.jk.common.ChannelSocket$SocketConnection.runIt(ChannelSocket.java:895)
> at
> org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:689)
> at java.lang.Thread.run(Thread.java:595)
>
>
> Here's an example of what I believe is the offending foxml
> <ead:unitid xmlns:ead="urn:isbn:1-931666-22-9">autogend1e275</ead:unitid>
>
> Thanks,
>
> Bill Parod
> Library Technology Division - Enterprise Systems
> Northwestern University Library
> bill-pa...@northwestern.edu
> 847 491 5368
>
>
>
>
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Bill Parod
Library Technology Division - Enterprise Systems
Northwestern University Library
bill-pa...@northwestern.edu
847 491 5368
------------------------------------------------------------------------------
Beautiful is writing same markup. Internet Explorer 9 supports
standards for HTML5, CSS3, SVG 1.1, ECMAScript5, and DOM L2 & L3.
Spend less time writing and rewriting code and more time creating great
experiences on the web. Be a part of the beta today.
http://p.sf.net/sfu/beautyoftheweb
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