Thanks for your patience. I have subscribed to the group as well.

Here's how I make dolfin:
$ mkdir /tmp/dolfin-install
$ wget https://bitbucket.org/fenics-project/dolfin/get/36860144ca08.zip
$ unzip 36860144ca08.zip
$ cmake ./fenics-project-dolfin-36860144ca08 > cmake.log 2>&1

Contents of cmake.log follow

###########################################################################################################
#########################################  cmake.log start
###############################################
###########################################################################################################

 -- The C compiler identification is GNU 4.8.1

-- The CXX compiler identification is GNU 4.8.1

-- Check for working C compiler: /usr/bin/cc

-- Check for working C compiler: /usr/bin/cc -- works

-- Detecting C compiler ABI info

-- Detecting C compiler ABI info - done

-- Check for working CXX compiler: /usr/bin/c++

-- Check for working CXX compiler: /usr/bin/c++ -- works

-- Detecting CXX compiler ABI info

-- Detecting CXX compiler ABI info - done

-- Performing Test HAVE_PIPE

-- Performing Test HAVE_PIPE - Success

-- Performing Test HAVE_PEDANTIC

-- Performing Test HAVE_PEDANTIC - Success

-- Performing Test HAVE_STD

-- Performing Test HAVE_STD - Success

-- Performing Test HAVE_DEBUG

-- Performing Test HAVE_DEBUG - Success

-- Performing Test HAVE_O2_OPTIMISATION

-- Performing Test HAVE_O2_OPTIMISATION - Success

-- The Fortran compiler identification is GNU

-- Check for working Fortran compiler: /usr/bin/gfortran

-- Check for working Fortran compiler: /usr/bin/gfortran  -- works

-- Detecting Fortran compiler ABI info

-- Detecting Fortran compiler ABI info - done

-- Checking whether /usr/bin/gfortran supports Fortran 90

-- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes

-- Could NOT find MPI_C (missing:  MPI_C_LIBRARIES MPI_C_INCLUDE_PATH)

-- Could NOT find MPI_CXX (missing:  MPI_CXX_LIBRARIES
MPI_CXX_INCLUDE_PATH)

-- Could NOT find MPI_Fortran (missing:  MPI_Fortran_LIBRARIES
MPI_Fortran_INCLUDE_PATH)

-- Try OpenMP C flag = [-fopenmp]

-- Performing Test OpenMP_FLAG_DETECTED

-- Performing Test OpenMP_FLAG_DETECTED - Success

-- Try OpenMP CXX flag = [-fopenmp]

-- Performing Test OpenMP_FLAG_DETECTED

-- Performing Test OpenMP_FLAG_DETECTED - Success

-- Found OpenMP: -fopenmp

-- Performing Test OPENMP_UINT_TEST_RUNS

-- Performing Test OPENMP_UINT_TEST_RUNS - Success

-- Boost version: 1.53.0

-- Found the following Boost libraries:

--   filesystem

--   program_options

--   system

--   thread

--   iostreams

--   timer

--   chrono

-- UFC version: 2.2.0+

-- Checking for package 'Armadillo'

-- Looking for Fortran sgemm

-- Looking for Fortran sgemm - found

-- Looking for include file pthread.h

-- Looking for include file pthread.h - found

-- Looking for pthread_create

-- Looking for pthread_create - found

-- Found Threads: TRUE

-- A library with BLAS API found.

-- A library with BLAS API found.

-- Looking for Fortran cheev

-- Looking for Fortran cheev - found

-- A library with LAPACK API found.

-- Performing Test ARMADILLO_TEST_RUNS

-- Performing Test ARMADILLO_TEST_RUNS - Success

-- Found Armadillo:
/lib64/libarmadillo.so;/lib64/liblapack.so;/lib64/libblas.so;/lib64/libblas.so
(Required is at least version "2.4.2")

-- Found LibXml2: /lib64/libxml2.so (found version "2.9.1")

-- Found PythonInterp: /usr/bin/python2 (found suitable version "2.7.5",
minimum required is "2")

-- Found PythonLibs: /lib64/libpython2.7.so (found suitable version
"2.7.5", minimum required is "2")

-- NumPy header version 1.7.1 found

-- Found SWIG: /usr/bin/swig (found version "2.0.10")

-- Checking for package 'PETSc'

-- PETSC_DIR is PETSC_DIR-NOTFOUND

-- PETSC_ARCH is empty

-- Unable to find petscconf.h

-- PETSc could not be found. Be sure to set PETSC_DIR and PETSC_ARCH.
(missing:  PETSC_LIBRARIES PETSC_DIR PETSC_INCLUDE_DIRS PETSC_TEST_RUNS
PETSC_VERSION PETSC_VERSION_OK) (Required is at least version "3.2")

-- Checking for package 'AMD'

-- Checking for package 'UMFPACK'

-- Checking for package 'AMD'

-- Checking for package 'CHOLMOD'

-- Checking for package 'AMD'

-- A library with BLAS API found.

-- Performing Test CHOLMOD_TEST_RUNS

-- Performing Test CHOLMOD_TEST_RUNS - Success

-- Performing Test UMFPACK_TEST_RUNS

-- Performing Test UMFPACK_TEST_RUNS - Success

-- Checking for package 'CHOLMOD'

-- Checking for package 'AMD'

-- A library with BLAS API found.

-- Could NOT find HDF5 (missing:  HDF5_LIBRARIES HDF5_INCLUDE_DIRS)

-- PASTIX_LIBRARIES PASTIX_LIBRARY-NOTFOUND;/lib64/librt.so;/lib64/libm.so

-- A library with BLAS API found.

-- PaStiX could not be found. Be sure to set PASTIX_DIR. (missing:
 PASTIX_INCLUDE_DIRS PASTIX_TEST_RUNS PASTIX_VERSION PASTIX_VERSION_OK)

-- Checking for Trilinos

-- Unable to find Trilinos (>= 11.0.0)

-- Trilinos could not be found

-- Checking for package 'CGAL'

-- Performing Test CGAL_TEST_RUNS

-- Performing Test CGAL_TEST_RUNS - Success

-- Found CGAL:
/usr/lib64/libCGAL.so;/usr/lib64/libboost_thread-mt.so;/usr/lib64/libboost_system-mt.so;/usr/lib64/libgmp.so;/usr/lib64/libmpfr.so
(Required is at least version "4.1")

-- Found ZLIB: /lib64/libz.so (found version "1.2.7")

-- Found PkgConfig: /usr/bin/pkg-config (found version "0.27.1")

-- checking for module 'cppunit'

--   found cppunit, version 1.12.1

-- Found CPPUNIT: /lib64/libcppunit.so

-- Checking for package 'Sphinx'

-- Could NOT find Sphinx (missing:  SPHINX_EXECUTABLE SPHINX_VERSION_OK)
(Required is at least version "1.1.0")

-- Looking for Q_WS_X11

-- Looking for Q_WS_X11 - found

-- Looking for Q_WS_WIN

-- Looking for Q_WS_WIN - not found

-- Looking for Q_WS_QWS

-- Looking for Q_WS_QWS - not found

-- Looking for Q_WS_MAC

-- Looking for Q_WS_MAC - not found

-- Found Qt4: /usr/bin/qmake-qt4 (found version "4.8.5")

-- Found VTK: /usr/lib64/vtk (found version "5.10")

-- 

-- The following optional packages were found:

-- -------------------------------------------

-- (OK) OPENMP

-- (OK) UMFPACK

-- (OK) CHOLMOD

-- (OK) CGAL

-- (OK) ZLIB

-- (OK) PYTHON

-- (OK) VTK

-- (OK) QT

-- 

-- The following optional packages were not found:

-- -----------------------------------------------

-- (**) MPI

-- (**) PETSC

-- (**) PETSC4PY

-- (**) SLEPC

-- (**) TAO

-- (**) TRILINOS

-- (**) PASTIX

-- (**) SCOTCH

-- (**) PARMETIS

-- (**) SPHINX

-- (**) HDF5

-- 

-- Looking for C++ include vtkExodusIIWriter.h

-- Looking for C++ include vtkExodusIIWriter.h - found

-- 

-- Generating SWIG interface.

-- --------------------------

-- 

-- Generating form files in demo, test, bench and dolfin directories. May
take some time...

-- 
----------------------------------------------------------------------------------------

-- 

-- Generating CMakeLists.txt files in demo, test and bench directories

-- -------------------------------------------------------------------

-- 

-- Download demo and test data. May take some time...

-- --------------------------------------------------

-- 

-- Copying demo and test data to build directory.

-- ----------------------------------------------

-- Disabling generation of documentation because Sphinx is missing.

-- Configuring done

-- Generating done

-- Build files have been written to: /tmp/dolfin-install


###########################################################################################################
######################################### end of cmake.log
##################################################
###########################################################################################################

Everything seems fine, right?


On 15 August 2013 08:14, Johannes Ring <[email protected]> wrote:

> BTW, if you subscribe to the fenics-support mailing list you might get
> faster response, since then your messages won't have to be moderated
> manually.
>
> Johannes
>
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