Please ignore comments below---the problem appears to be VirtualBox hanging in the middle of the rather long compilation. I am using Ubuntu-12.04 running on Mac OS X 10.9.1. This may be an issue with Mac OS X 10.9.x and VirtualBox.Unfortunately it does not appear possible to restart the compilation where it stopped and a fresh start is required. ...Peter
On Dec 20, 2013, at 7:55 PM, Peter Lichtner <[email protected]> wrote: > I made a fresh start after setting PETSC_DIR and PETSC_ARCH (would be good to > warn the user to do this in advance!) and after several hours got to the > following point: > > ./dorsal.sh > ... > > TESTING: configureLibrary from > PETSc.packages.hypre(/home/lichtner/FEniCS/stable/src/petsc-3.4.2/config/BuildSystem/config/package.py:464) > > ************************************************************************************************** > Please register to use hypre at > https://computation.llnl.gov/casc/linear_solvers/sls_hypre.html > > ************************************************************************************************** > > where the build process appears to hang. Does this mean I have to register to > use hypre (I don't see anywhere to do this on the hypre web page) which I > don't think I really need anyway? Maybe this is a PETSc issue? > > Thanks, ...Peter > > On Dec 20, 2013, at 3:42 PM, Peter Lichtner <[email protected]> wrote: > >> Greetings: I set the parmetis project to download parmetis-4.0.3 and that >> seemed to work. However, installing fenics using dorsal failed later on >> after setting PETSC_DIR and rerunning: >> >> ./dorsal.sh >> ... >> >> Install the project... >> -- Install configuration: "RELEASE" >> -- Installing: /usr/local/include/Trilinos_version.h >> CMake Error at cmake_install.cmake:36 (FILE): >> file INSTALL cannot copy file >> >> "/home/lichtner/FEniCS/stable/src/trilinos-11.4.1-Source/dorsal_build_dir/././Trilinos_version.h" >> to "/usr/local/include/Trilinos_version.h". >> >> >> make: *** [install] Error 1 >> make: Leaving directory >> `/home/lichtner/FEniCS/stable/src/trilinos-11.4.1-Source/dorsal_build_dir' >> Failure with exit status: 2 >> Exit message: There was a problem building trilinos-11.4.1-Source. >> >> My dorsal config file looks like: >> >> dorsal.cfg >> # Global configuration variables go here. You will want to tweak this >> # file to suit your needs. If you want to keep local changes that are >> # not overwritten by repository updates, those can be written >> # to local.cfg instead (entries there will override those in this file). >> >> # Meta-project to build >> PROJECT=FEniCS >> # Where do you want the downloaded source files to go? >> # DOWNLOAD_PATH=${HOME}/Work/${PROJECT}/src >> DOWNLOAD_PATH=/home/lichtner/FEniCS/stable/src >> # Where do you want the compiled software installed? >> # INSTALL_PATH=${HOME}/Work/${PROJECT} >> INSTALL_PATH=/home/lichtner/FEniCS/stable/fenics >> # How many processes would you like to build using? >> PROCS=1 >> # Would you like to build stable versions of FEniCS projects? >> STABLE_BUILD=true >> # Would you like to use snapshots when using STABLE_BUILD=false? >> USE_SNAPSHOTS=false >> >> So not sure I understand why installing in /usr/local/... >> >> Thanks for any help, ...Peter >> >>> Greeting: I am trying to install FEniCS on Ubuntu 12.04 using the automated >>> dorsal installation. However, I get an error trying to download parmetis: >>> >>> ./dorsal.sh >>> ... >>> -- Installing: /home/lichtner/FEniCS/stable/fenics/lib/libCGAL.so >>> make: Leaving directory >>> `/home/lichtner/FEniCS/stable/src/CGAL-4.1/dorsal_build_dir' >>> Fetching parmetis-4.0.2 >>> --2013-12-20 12:19:28-- >>> http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/parmetis-4.0.2.tar.gz >>> Resolving glaros.dtc.umn.edu (glaros.dtc.umn.edu)... failed: Name or >>> service not known. >>> wget: unable to resolve host address `glaros.dtc.umn.edu' >>> Unpacking parmetis-4.0.2 >>> parmetis-4.0.2.tar.gz does not exist. Please download first. >>> >>> Looks like there is a newer release parmetis-4.0.3 which may be why it is >>> not found. Can this newer release be used? >>> >>> Second: Not clear to me where to put parmetis-4.0.x.tar.gz when downloaded. >>> >>> Thanks for any help, >>> ...Peter >> >> ________________ >> Peter Lichtner >> Santa Fe, NM 87507 >> (505) 692-4029 (c) >> OFM Research >> > > ________________ > Peter Lichtner > Santa Fe, NM 87507 > (505) 692-4029 (c) > OFM Research > ________________ Peter Lichtner Santa Fe, NM 87507 (505) 692-4029 (c) OFM Research
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