Any reason you need the old DOLFIN 1.2.0 release? If not, please update Dorsal and do a full rebuild. This will give you the latest 1.3.0 release and hopefully, you will no longer have this problem.
Johannes On Thu, Jan 16, 2014 at 7:39 PM, Reuben Kraft <[email protected]> wrote: > Hello, > > I am trying to build fenics from source. I’m at the last step of compiling > dolphin but I am having issues with parmetis. It seems my error is similar > to a previous one: https://bugs.launchpad.net/dolfin/+bug/1072704 > That issue was resolved by moving to a newer version of parmetis. Any > suggestions how to fix this? I tried to manually set IDXTYPEWIDTH and > REALTYPEWIDTH in metis.h but it did not help. > > Thank you. > Reuben > > > [rhk12@cyberstar fenics-project-dorsal-c667be24d0f1]$ ./dorsal.sh > FEniCS/platforms/contributed/rk_openmpi_rootless.platform > /usr/bin/which: no gdate in > (/gpfs/home/rhk12/work/CEI/bin:/gpfs/home/rhk12/Work/FEniCS/bin:/usr/local/bin:/opt/moab/bin:/usr/lpp/mmfs/bin:/usr/global/cmake/2.8.9/bin:/usr/global/openmpi/1.6.0/bin:/usr/global/openmpi/1.6.0/gnu/bin:/usr/global/python/3.3.2/bin:/gpfs/home/rhk12/work/CEI/bin:/gpfs/home/rhk12/Work/FEniCS/bin:/usr/lib64/qt-3.3/bin:/usr/global/pgi/12.5/linux86-64/12.5/bin:/usr/global/intel/composer_xe/2013.0.079/composer_xe_2013.0.079/bin/intel64:/usr/global/java/jdk1.7.0_21/bin:/usr/global/bin:/usr/local/bin:/opt/moab/bin:/usr/lpp/mmfs/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/dell/srvadmin/bin:./:/gpfs/home/rhk12/bin:./) > Found configuration for project FEniCS. > Fetching dolfin-1.2.0 > Unpacking dolfin-1.2.0 > Building dolfin-1.2.0 > ./dorsal_configure: line 83: declare: TMOUT: readonly variable > -- Boost version: 1.51.0 > -- Found the following Boost libraries: > -- filesystem > -- program_options > -- system > -- thread > -- iostreams > -- mpi > -- serialization > -- timer > -- chrono > -- UFC version: 2.2.0 > -- Checking for package 'Armadillo' > -- A library with BLAS API found. > -- A library with BLAS API found. > -- A library with LAPACK API found. > /gpfs/home/rhk12/Work/FEniCS/lib/python2.7/site-packages/numpy/random/__init__.py:87: > RuntimeWarning: compiletime version 2.7 of module 'mtrand' does not match > runtime version 2.6 > from mtrand import * > -- Checking for package 'PETSc' > -- PETSC_DIR is /gpfs/home/rhk12/Work/FEniCS > -- PETSC_ARCH is empty > -- Found petscconf.h > -- Performing test PETSC_TEST_RUNS - Success > -- PETSc configured without Cusp support > -- Checking for package 'SLEPc' > -- SLEPC_DIR is /gpfs/home/rhk12/Work/FEniCS > -- Performing test SLEPC_TEST_RUNS - Success > -- Checking for package 'SCOTCH-PT' > -- Found SCOTCH (version 6.0.0) > -- Performing test SCOTCH_TEST_RUNS > -- Performing test SCOTCH_TEST_RUNS - Success > -- Checking for package 'AMD' > -- Checking for package 'UMFPACK' > -- Checking for package 'AMD' > -- Checking for package 'CHOLMOD' > -- Checking for package 'AMD' > -- A library with BLAS API found. > -- Checking for package 'CHOLMOD' > -- Checking for package 'AMD' > -- A library with BLAS API found. > -- PASTIX_LIBRARIES > /gpfs/home/rhk12/Work/FEniCS/lib/libpastix.a;/usr/lib64/librt.so;/usr/lib64/libm.so > -- A library with BLAS API found. > -- Checking for Trilinos > -- Trilinos version 11.4.1 found. Checking for components > -- Epetra found > -- Zoltan found > -- ML found > -- Ifpack found > -- Amesos found > -- All necessary Trilinos components found. Trilinos will be enabled. > -- Checking for package 'CGAL' > -- Checking for package 'Sphinx' > -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE SPHINX_VERSION_OK) > (Required is at least version "1.0.7") > -- Found VTK: /gpfs/home/rhk12/Work/FEniCS/lib/vtk-5.8 (found version "5.8") > -- > -- The following optional packages were found: > -- ------------------------------------------- > -- (OK) OPENMP > -- (OK) MPI > -- (OK) PETSC > -- (OK) SLEPC > -- (OK) TRILINOS > -- (OK) UMFPACK > -- (OK) PASTIX > -- (OK) SCOTCH > -- (OK) PARMETIS > -- (OK) CGAL > -- (OK) ZLIB > -- (OK) PYTHON > -- (OK) HDF5 > -- (OK) VTK > -- (OK) QT > -- > -- The following optional packages were not be found: > -- -------------------------------------------------- > -- (**) CHOLMOD > -- (**) SPHINX > -- > -- Disabling generation of documentation because Sphinx is missing. > -- Configuring done > -- Generating done > -- Build files have been written to: > /gpfs/home/rhk12/Work/FEniCS/src/dolfin-1.2.0/dorsal_build_dir > ./dorsal_build: line 83: declare: TMOUT: readonly variable > make: Entering directory > `/gpfs/home/rhk12/Work/FEniCS/src/dolfin-1.2.0/dorsal_build_dir' > make[1]: Entering directory > `/gpfs/home/rhk12/Work/FEniCS/src/dolfin-1.2.0/dorsal_build_dir' > make[2]: Entering directory > `/gpfs/home/rhk12/Work/FEniCS/src/dolfin-1.2.0/dorsal_build_dir' > make[2]: Leaving directory > `/gpfs/home/rhk12/Work/FEniCS/src/dolfin-1.2.0/dorsal_build_dir' > make[2]: Entering directory > `/gpfs/home/rhk12/Work/FEniCS/src/dolfin-1.2.0/dorsal_build_dir' > [ 0%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o > In file included from > /gpfs/home/rhk12/Work/FEniCS/src/dolfin-1.2.0/dolfin/graph/ParMETIS.cpp:34: > /gpfs/home/rhk12/Work/FEniCS/include/parmetis.h:33:4: error: #error > "Incorrect user-supplied value fo IDXTYPEWIDTH" > /gpfs/home/rhk12/Work/FEniCS/include/parmetis.h:42:4: error: #error > "Incorrect user-supplied value fo REALTYPEWIDTH" > In file included from > /gpfs/home/rhk12/Work/FEniCS/src/dolfin-1.2.0/dolfin/graph/ParMETIS.cpp:34: > /gpfs/home/rhk12/Work/FEniCS/include/parmetis.h:66: error: ‘idx_t’ was not > declared in this scope > /gpfs/home/rhk12/Work/FEniCS/include/parmetis.h:66: error: ‘vtxdist’ was not > declared in this scope > /gpfs/home/rhk12/Work/FEniCS/include/parmetis.h:66: error: ‘idx_t’ was not > declared in this scope > /gpfs/home/rhk12/Work/FEniCS/include/parmetis.h:66: error: ‘xadj’ was not > declared in this scope > /gpfs/home/rhk12/Work/FEniCS/include/parmetis.h:66: error: ‘idx_t’ was not > declared in this scope > /gpfs/home/rhk12/Work/FEniCS/include/parmetis.h:66: error: ‘adjncy’ was not > declared in this scope > /gpfs/home/rhk12/Work/FEniCS/include/parmetis.h:66: error: ‘idx_t’ was not > declared in this scope > /gpfs/home/rhk12/Work/FEniCS/include/parmetis.h:66: error: ‘vwgt’ was not > declared in this scope > /gpfs/home/rhk12/Work/FEniCS/include/parmetis.h:67: error: ‘idx_t’ was not > declared in this scope > /gpfs/home/rhk12/Work/FEniCS/include/parmetis.h:67: error: ‘adjwgt’ was not > declared in this scope > /gpfs/home/rhk12/Work/FEniCS/include/parmetis.h:67: error: ‘idx_t’ was not > declared in this scope > /gpfs/home/rhk12/Work/FEniCS/include/parmetis.h:67: error: ‘wgtflag’ was not > declared in this scope > /gpfs/home/rhk12/Work/FEniCS/include/parmetis.h:67: error: ‘idx_t’ was not > declared in this scope > /gpfs/home/rhk12/Work/FEniCS/include/parmetis.h:67: error: ‘numflag’ was not > declared in this scope > /gpfs/home/rhk12/Work/FEniCS/include/parmetis.h:67: error: ‘idx_t’ was not > declared in this scope > /gpfs/home/rhk12/Work/FEniCS/include/parmetis.h:67: error: ‘ncon’ was not > declared in this scope > /gpfs/home/rhk12/Work/FEniCS/include/parmetis.h:67: error: ‘idx_t’ was not > declared in this scope > > _______________________________________________ > fenics-support mailing list > [email protected] > http://fenicsproject.org/mailman/listinfo/fenics-support > _______________________________________________ fenics-support mailing list [email protected] http://fenicsproject.org/mailman/listinfo/fenics-support
