Hi FEniCS devs,
I'm trying to install FEniCS (on a Gentoo) Linux x86_64 box. I have
these packages build and installed
kalle fenics # ls -lah
total 5.1M
drwxr-xr-x 8 root root 4.0K Feb 5 12:00 .
drwxr-xr-x 66 root root 4.0K Feb 5 10:19 ..
-rw-r--r-- 1 root root 85K Feb 4 16:11 235a0e086f6d.zip
-rw-r--r-- 1 root root 141K Feb 5 08:58 2b4002ad75a8.zip
-rw-r--r-- 1 root root 407K Feb 4 16:15 807c9581e17e.zip
-rw-r--r-- 1 root root 3.9M Feb 5 08:59 ac6f9d186802.zip
-rw-r--r-- 1 root root 196K Feb 4 16:13 c71d79029b7e.zip
-rw-r--r-- 1 root root 423K Feb 4 16:09 fbeccf991aa1.zip
drwxr-xr-x 13 root root 4.0K Feb 5 12:01 fenics-project-dolfin-ac6f9d186802
drwxr-xr-x 9 root root 4.0K Feb 4 16:40 fenics-project-ffc-fbeccf991aa1
drwxr-xr-x 6 root root 4.0K Feb 5 08:53 fenics-project-fiat-235a0e086f6d
drwxr-xr-x 7 root root 4.0K Feb 5 08:53
fenics-project-instant-c71d79029b7e
drwxr-xr-x 6 root root 4.0K Feb 5 12:00 fenics-project-ufc-2b4002ad75a8
drwxr-xr-x 9 root root 4.0K Feb 5 08:54 fenics-project-ufl-807c9581e17e
exept fenics-project-dolfin-ac6f9d186802 which fails when running cmake:
kalle fenics-project-dolfin-ac6f9d186802 # mkdir build/
kalle fenics-project-dolfin-ac6f9d186802 # cd build/
kalle build # cmake ..
-- The C compiler identification is GNU 4.8.2
-- The CXX compiler identification is GNU 4.8.2
-snip-
-- Found Qt4: /usr/bin/qmake (found version "4.8.5")
CMake Warning at CMakeLists.txt:511 (find_package):
Could not find a package configuration file provided by "VTK" with any of
the following names:
VTKConfig.cmake
vtk-config.cmake
Add the installation prefix of "VTK" to CMAKE_PREFIX_PATH or set
"VTK_DIR"
to a directory containing one of the above files. If "VTK" provides a
separate development package or SDK, be sure it has been installed.
--
-- The following optional packages were found:
-- -------------------------------------------
-- (OK) OPENMP
-- (OK) MPI
-- (OK) PETSC
-- (OK) CHOLMOD
-- (OK) SCOTCH
-- (OK) CGAL
-- (OK) ZLIB
-- (OK) PYTHON
-- (OK) HDF5
-- (OK) QT
--
-- The following optional packages were not found:
-- -----------------------------------------------
-- (**) PETSC4PY
-- (**) SLEPC
-- (**) TAO
-- (**) TRILINOS
-- (**) UMFPACK
-- (**) PASTIX
-- (**) PARMETIS
-- (**) SPHINX
-- (**) VTK
--
--
-- Generating SWIG interface.
-- --------------------------
--
-- Generating form files in demo, test, bench and dolfin directories.
May take some time...
--
----------------------------------------------------------------------------------------
CMake Error at CMakeLists.txt:779 (message):
Generation of form files failed:
Traceback (most recent call last):
File "/usr/local/bin/ffc", line 40, in <module>
from ufl.log import UFLException
ImportError: No module named ufl.log
Traceback (most recent call last):
File
"/root/software/fenics/fenics-project-dolfin-ac6f9d186802/cmake/scripts/generate-form-files",
line 73, in <module>
raise RuntimeError, "Unable to compile form: %s/%s" % (root, f)
RuntimeError: Unable to compile form: dolfin/ale/Poisson2D.ufl
-- Configuring incomplete, errors occurred!
Regards,
Fredrik Lingvall
PS. The full cmake output is shown below:
kalle build # cmake ..
-- The C compiler identification is GNU 4.8.2
-- The CXX compiler identification is GNU 4.8.2
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
fatal: Not a git repository (or any of the parent directories): .git
-- Performing Test HAVE_PIPE
-- Performing Test HAVE_PIPE - Success
-- Performing Test HAVE_PEDANTIC
-- Performing Test HAVE_PEDANTIC - Success
-- Performing Test HAVE_STD_CPP11
-- Performing Test HAVE_STD_CPP11 - Success
-- Performing Test HAVE_DEBUG
-- Performing Test HAVE_DEBUG - Success
-- Performing Test HAVE_O2_OPTIMISATION
-- Performing Test HAVE_O2_OPTIMISATION - Success
-- The Fortran compiler identification is GNU
-- Check for working Fortran compiler: /usr/bin/gfortran
-- Check for working Fortran compiler: /usr/bin/gfortran -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/gfortran supports Fortran 90
-- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
-- Found MPI_C:
/usr/lib64/libmpi.so;/usr/lib64/libopen-rte.so;/usr/lib64/libopen-pal.so;/usr/lib64/libdl.so;/usr/lib64/libnsl.so;/usr/lib64/libutil.so;/usr/lib64/libm.so;/usr/lib64/libdl.so
-- Found MPI_CXX:
/usr/lib64/libmpi_cxx.so;/usr/lib64/libmpi.so;/usr/lib64/libopen-rte.so;/usr/lib64/libopen-pal.so;/usr/lib64/libdl.so;/usr/lib64/libnsl.so;/usr/lib64/libutil.so;/usr/lib64/libm.so;/usr/lib64/libdl.so
-- Found MPI_Fortran:
/usr/lib64/libmpi_f90.so;/usr/lib64/libmpi_f77.so;/usr/lib64/libmpi.so;/usr/lib64/libopen-rte.so;/usr/lib64/libopen-pal.so;/usr/lib64/libdl.so;/usr/lib64/libnsl.so;/usr/lib64/libutil.so;/usr/lib64/libm.so;/usr/lib64/libdl.so
-- Try OpenMP C flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Try OpenMP CXX flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Found OpenMP: -fopenmp
-- Performing Test OPENMP_UINT_TEST_RUNS
-- Performing Test OPENMP_UINT_TEST_RUNS - Success
-- Boost version: 1.53.0
-- Found the following Boost libraries:
-- filesystem
-- program_options
-- system
-- thread
-- iostreams
-- timer
-- chrono
-- mpi
-- serialization
-- UFC version: 2.3.0+
-- Found Eigen3: /usr/include/eigen3 (Required is at least version "3.0.0")
-- Found LibXml2: /usr/lib64/libxml2.so (found version "2.9.1")
-- Found PythonInterp: /usr/bin/python2 (found suitable version "2.7.5",
minimum required is "2")
-- NumPy header version 1.7.1 found
-- Found SWIG: /usr/bin/swig (found version "2.0.9")
-- Checking for package 'PETSc'
-- PETSC_DIR is /usr/local
-- PETSC_ARCH is empty
-- Found petscconf.h
-- Performing test PETSC_TEST_RUNS - Success
-- Performing Test PETSC_CUSP_FOUND
-- Performing Test PETSC_CUSP_FOUND - Failed
-- PETSc configured without Cusp support
-- Found PETSc: /usr/local/lib64/libpetsc.so (Required is at least
version "3.2")
-- Checking for package 'SLEPc'
-- SLEPC_DIR is SLEPC_DIR-NOTFOUND
-- SLEPc could not be found. Be sure to set SLEPC_DIR, PETSC_DIR, and
PETSC_ARCH. (missing: SLEPC_LIBRARIES SLEPC_DIR SLEPC_INCLUDE_DIRS
SLEPC_TEST_RUNS SLEPC_VERSION SLEPC_VERSION_OK) (Required is at least
version "3.2")
-- Checking for package 'TAO'
-- TAO_DIR is TAO_DIR-NOTFOUND
-- TAO could not be found. Be sure to set TAO_DIR, PETSC_DIR, and
PETSC_ARCH. (missing: TAO_LIBRARIES TAO_DIR TAO_INCLUDE_DIRS
TAO_TEST_RUNS)
-- Checking for package 'PETSc4Py'
-- ParMETIS could not be found/configured. (missing: PARMETIS_TEST_RUNS
PARMETIS_INCLUDE_DIRS PARMETIS_VERSION PARMETIS_VERSION_OK) (Required is
at least version "4.0.2")
-- Checking for package 'SCOTCH-PT'
-- Found SCOTCH (version 6.0.0)
-- Performing test SCOTCH_TEST_RUNS
-- Performing test SCOTCH_TEST_RUNS - Success
-- Found SCOTCH:
/usr/lib64/libptscotch.so;/usr/lib64/libscotch.so;/usr/lib64/libptscotcherr.so
-- Checking for package 'AMD'
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - found
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - found
-- Found Threads: TRUE
-- Checking for package 'UMFPACK'
-- Checking for package 'AMD'
-- Checking for package 'CHOLMOD'
-- Checking for package 'AMD'
-- A library with BLAS API found.
-- Looking for Fortran cheev
-- Looking for Fortran cheev - found
-- Performing Test CHOLMOD_TEST_RUNS
-- Performing Test CHOLMOD_TEST_RUNS - Success
-- Performing Test UMFPACK_TEST_RUNS
-- Performing Test UMFPACK_TEST_RUNS - Failed
-- Checking for package 'CHOLMOD'
-- Checking for package 'AMD'
-- A library with BLAS API found.
-- Found HDF5:
debug;/usr/lib64/libhdf5_hl.so;debug;/usr/lib64/libhdf5.so;debug;/usr/lib64/libsz.so;debug;/usr/lib64/libz.so;debug;/usr/lib64/libm.so;optimized;/usr/lib64/libhdf5_hl.so;optimized;/usr/lib64/libhdf5.so;optimized;/usr/lib64/libsz.so;optimized;/usr/lib64/libz.so;optimized;/usr/lib64/libm.so
-- PASTIX_LIBRARIES
PASTIX_LIBRARY-NOTFOUND;/usr/lib64/librt.so;/usr/lib64/libm.so
-- A library with BLAS API found.
-- PaStiX could not be found. Be sure to set PASTIX_DIR. (missing:
PASTIX_INCLUDE_DIRS PASTIX_TEST_RUNS PASTIX_VERSION PASTIX_VERSION_OK)
-- Checking for Trilinos
-- Unable to find Trilinos (>= 11.0.0)
-- Trilinos could not be found
-- Checking for package 'CGAL'
-- Performing Test CGAL_TEST_RUNS
-- Performing Test CGAL_TEST_RUNS - Success
-- Found CGAL:
/usr/lib64/libCGAL.so;/usr/lib64/libboost_thread-mt.so;/usr/lib64/libboost_system-mt.so;/usr/lib64/libgmp.so;/usr/lib64/libmpfr.so
(Required is at least version "4.1")
-- Found ZLIB: /usr/lib64/libz.so (found version "1.2.8")
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.28")
-- checking for module 'cppunit'
-- found cppunit, version 1.13.1
-- Found CPPUNIT: /usr/lib64/libcppunit.so
-- Checking for package 'Sphinx'
-- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE SPHINX_VERSION_OK)
(Required is at least version "1.1.0")
-- Looking for Q_WS_X11
-- Looking for Q_WS_X11 - found
-- Looking for Q_WS_WIN
-- Looking for Q_WS_WIN - not found
-- Looking for Q_WS_QWS
-- Looking for Q_WS_QWS - not found
-- Looking for Q_WS_MAC
-- Looking for Q_WS_MAC - not found
-- Found Qt4: /usr/bin/qmake (found version "4.8.5")
CMake Warning at CMakeLists.txt:511 (find_package):
Could not find a package configuration file provided by "VTK" with any of
the following names:
VTKConfig.cmake
vtk-config.cmake
Add the installation prefix of "VTK" to CMAKE_PREFIX_PATH or set
"VTK_DIR"
to a directory containing one of the above files. If "VTK" provides a
separate development package or SDK, be sure it has been installed.
--
-- The following optional packages were found:
-- -------------------------------------------
-- (OK) OPENMP
-- (OK) MPI
-- (OK) PETSC
-- (OK) CHOLMOD
-- (OK) SCOTCH
-- (OK) CGAL
-- (OK) ZLIB
-- (OK) PYTHON
-- (OK) HDF5
-- (OK) QT
--
-- The following optional packages were not found:
-- -----------------------------------------------
-- (**) PETSC4PY
-- (**) SLEPC
-- (**) TAO
-- (**) TRILINOS
-- (**) UMFPACK
-- (**) PASTIX
-- (**) PARMETIS
-- (**) SPHINX
-- (**) VTK
--
--
-- Generating SWIG interface.
-- --------------------------
--
-- Generating form files in demo, test, bench and dolfin directories.
May take some time...
--
----------------------------------------------------------------------------------------
CMake Error at CMakeLists.txt:779 (message):
Generation of form files failed:
Traceback (most recent call last):
File "/usr/local/bin/ffc", line 40, in <module>
from ufl.log import UFLException
ImportError: No module named ufl.log
Traceback (most recent call last):
File
"/root/software/fenics/fenics-project-dolfin-ac6f9d186802/cmake/scripts/generate-form-files",
line 73, in <module>
raise RuntimeError, "Unable to compile form: %s/%s" % (root, f)
RuntimeError: Unable to compile form: dolfin/ale/Poisson2D.ufl
-- Configuring incomplete, errors occurred!
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