On Wed, Mar 26, 2014 at 5:27 PM, Johannes Ring <[email protected]> wrote:
> On Wed, Mar 26, 2014 at 5:20 PM, Bishesh Khanal <[email protected]> > wrote: > > > > > > > > On Wed, Mar 26, 2014 at 3:29 PM, Johannes Ring <[email protected]> > wrote: > >> > >> On Wed, Mar 26, 2014 at 3:00 PM, Bishesh Khanal <[email protected]> > >> wrote: > >> > On Mon, Mar 24, 2014 at 11:23 AM, Johannes Ring <[email protected]> > >> > wrote: > >> >> Did you get this to work? If not, you could try to configure DOLFIN > >> >> with -DBoost_USE_MULTITHREADED:BOOL=OFF. > >> > > >> > I tried this too, but it still gives exactly the same error as before; > >> > ldd > >> > on libdolfin.so still returns the same content. I'm surprised that > >> > fenics > >> > seems to be very difficult to install! > >> > If it helps, here is the output when I do configure with make, before > >> > doing > >> > the make install: > >> > > >> > cmake > >> > > >> > > -DCMAKE_INSTALL_PREFIX=/home/bkhanal/Documents/softwares/fenicsComponents/installDirectory/ > >> > -DBoost_USE_MULTITHREADED:BOOL=OFF .. > >> > >> The problem is that you have multiple installations of Boost and CMake > >> is not clever enough to pick the correct Boost libraries without some > >> help. > >> > >> Try to export the following environment variables before running cmake > >> (modify them to match your setup): > >> > >> export BOOST_DIR=/path/to/boost-installation > >> export BOOST_INCLUDEDIR=${BOOST_DIR}/include > >> export BOOST_LIBRARYDIR=${BOOST_DIR}/lib > >> export BOOST_ROOT=${BOOST_DIR} > >> > >> Also remove the CMakeCache.txt file in the build directory before > running > >> cmake. > > > > > > I have the following in my .bashrc: > > > > export > > > C_INCLUDE_PATH=/home/bkhanal/Documents/softwares/boost_1_55_0/build/include:$C_INCLUDE_PATH > > export > > > CPLUS_INCLUDE_PATH=/home/bkhanal/Documents/softwares/boost_1_55_0/build/include:$CPLUS_INCLUDE_PATH > > export > > > LIBRARY_PATH=/home/bkhanal/Documents/softwares/boost_1_55_0/build/lib:$LIBRARY_PATH > > export > > > LD_LIBRARY_PATH=/home/bkhanal/Documents/softwares/boost_1_55_0/build/lib:$LD_LIBRARY_PATH > > > > export BOOST_DIR=/home/bkhanal/Documents/softwares/boost_1_55_0/build > > export BOOST_INCLUDE_DIR=${BOOST_DIR}/include > > export BOOST_LIBRARY_DIR=${BOOST_DIR}/lib > > export BOOST_ROOT=${BOOST_DIR} > > > > I deleted the CMakeCache.txt (in fact the whole directory) and reran the > > CMake. It still gives me the same error with the same content on > libdolfin. > > I export the env. variables by putting them in the .bashrc . Should I do > sth > > else here ? > > That should be fine, but you must source ~/.bashrc or start a new > terminal to set the variables. > > > But then, when running CMake it seems to take up the right path for the > > boost (this I check by running ccmake and I looking at the boost related > > variables). But then afterwards when doing make, I do not understand why > it > > is not taking up the path the CMake has stored in the related variables. > > When you run make, does cmake run again? > I'm not sure I understand. Ok here is what I do in detail: I created a new directory build and ran all of the following commands under it. ------------Configuration under ccmake---------------------- $ccmake -DCMAKE_INSTALL_PREFIX=/home/bkhanal/Documents/softwares/fenicsComponents/installDirectory/ -DBoost_USE_MULTITHREADED:BOOL=OFF .. Here I had to change the variables related to the following: (to provide proper paths): petsc, vtk, eigen, CGAL. (For boost, it takes up the proper path from .bashrc, so I don't need to do anything) I also needed to disable DOLFIN_ENABLE_UNIT_TESTS otherwise, I would get this error: CMake Error at CMakeLists.txt:495 (if): if given arguments: "LESS" "1.13.1" Unknown arguments specified The content of the CMakeLists.txt, including the Line 495 in bold text: # Check for cppunit if (DOLFIN_ENABLE_UNIT_TESTS) find_package(CppUnit) # Older version of CPPUNIT use std::auto_ptr, which is deprecated * if (${CPPUNIT_VERSION} LESS 1.13.1)* include(CheckCXXCompilerFlag) CHECK_CXX_COMPILER_FLAG(-Wno-deprecated HAVE_NO_DEPRECATED) if (HAVE_NO_DEPRECATED) set(CMAKE_CXX_FLAGS_DEVELOPER "${CMAKE_CXX_FLAGS_DEVELOPER} -Wno-deprecated") endif() endif() endif() So, I set DOLFIN_ENABLE_UNIT_TESTS to off, then configured. ---------------Generation under ccmake----------------- I just pressed 'g' to generate under ccmake. ------------------ make install----------------------- I exited from the ccmake, then used: $make install I guess it should take the configuration that was in cmake instead of reconfiguring again from the scratch. If it was, I believe it would have complained about the missing paths for e.g. for petsc, cgal etc. Here is the output in the beginning during make install: $make install -j4 Scanning dependencies of target copy_swig_files Scanning dependencies of target dolfin [ 0%] Built target copy_swig_files [ 1%] [ 1%] [ 1%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/SpecialFunctions.cpp.o [ 1%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/FunctionAssigner.cpp.o Building CXX object dolfin/CMakeFiles/dolfin.dir/function/SpecialFacetFunction.cpp.o Building CXX object dolfin/CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o [ 2%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/SubSpace.cpp.o In file included from /user/bkhanal/home/Documents/softwares/fenicsComponents/fenics-project-dolfin-ed58f6bd083b/dolfin/mesh/Mesh.h:40:0, from /user/bkhanal/home/Documents/softwares/fenicsComponents/fenics-project-dolfin-ed58f6bd083b/dolfin/mesh/Cell.h:33, from /user/bkhanal/home/Documents/softwares/fenicsComponents/fenics-project-dolfin-ed58f6bd083b/dolfin/function/FunctionSpace.h:38, from /user/bkhanal/home/Documents/softwares/fenicsComponents/fenics-project-dolfin-ed58f6bd083b/dolfin/function/SubSpace.h:25, from /user/bkhanal/home/Documents/softwares/fenicsComponents/fenics-project-dolfin-ed58f6bd083b/dolfin/function/SubSpace.cpp:24: /user/bkhanal/home/Documents/softwares/fenicsComponents/fenics-project-dolfin-ed58f6bd083b/dolfin/common/MPI.h:43:0: warning: "MPI_COMM_WORLD" redefined [enabled by default] /home/bkhanal/Documents/softwares/petsc-3.4.3/arch-linux2-cxx-debug/include/mpi.h:266:0: note: this is the location of the previous definition /user/bkhanal/home/Documents/softwares/fenicsComponents/fenics-project-dolfin-ed58f6bd083b/dolfin/common/MPI.h:44:0: warning: "MPI_COMM_SELF" redefined [enabled by default] /home/bkhanal/Documents/softwares/petsc-3.4.3/arch-linux2-cxx-debug/include/mpi.h:267:0: note: this is the location of the previous definition /user/bkhanal/home/Documents/softwares/fenicsComponents/fenics-project-dolfin-ed58f6bd083b/dolfin/common/MPI.h:45:0: warning: "MPI_COMM_NULL" redefined [enabled by default] /home/bkhanal/Documents/softwares/petsc-3.4.3/arch-linux2-cxx-debug/include/mpi.h:81:0: note: this is the location of the previous definition [ 2%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/Function.cpp.o In file included from /user/bkhanal/home/Documents/softwares/fenicsComponents/fenics-project-dolfin-ed58f6bd083b/dolfin/common/utils.h:33:0, from /user/bkhanal/home/Documents/softwares/fenicsComponents/fenics-pr And it goes on ... But I still get the same error. > Johannes >
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