On Thu, May 29, 2014 at 6:58 PM, Christopher DeMars
<[email protected]> wrote:
> Here is the result from using dorsal. I even tried replacing
> Teuchos_CommHelpers.hpp with the file from the latest version of the
> Trilinos source release. The error below was created by running dorsal on a
> cleaned up enviorment.
>
> First the setup:
>
>> sudo ppa-purge ppa:fenics-packages/fenics
>> sudo apt-get remove --purge fenics dolfin-bin dolfin-doc libdolfin1.3
>> libdolfin1.3-dev python-dolfin
>> sudo apt-get autoremove
>> sudo apt-get install bzr bzrtools cmake flex g++ gfortran
>> libarmadillo-dev libatlas-base-dev libboost-dev
>> libboost-{filesystem,iostreams,mpi,program-options,thread,math,tier,chrono}-dev
>> libcln-dev libcppunit-dev libginac-dev liblapack-dev libmpfr-dev
>> libopenmpi-dev libptscotch-dev libsuitesparse-dev libxml2-dev openmpi-bin
>> pkg-config python-dev ython-numpy python-scientific python-vtk subversion
>> swig wget bison libhwloc-dev python-ply libvtk5-dev python-netcdf
>> libhdf5-openmpi-dev libeigen3-dev libcgal-dev
>
> (the last one didn't do anything as all those packages were updated
> previously)
>
>> mkdir src
>> git clone [email protected]:fenics-project/dorsal.git
>> cd dorsal/
>> vim dorsal.cfg
>
> # Global configuration variables go here. You will want to tweak this
> # file to suit your needs. If you want to keep local changes that are
> # not overwritten by repository updates, those can be written
> # to local.cfg instead (entries there will override those in this file).
>
> # Meta-project to build
> PROJECT=FEniCS
> # Where do you want the downloaded source files to go?
> DOWNLOAD_PATH=${HOME}/tmpsoftware/src
> # Where do you want the compiled software installed?
> INSTALL_PATH=/usr/local
> # How many processes would you like to build using?
> PROCS=4
> # Would you like to build stable versions of FEniCS projects?
> STABLE_BUILD=false
> # Would you like to use snapshots when using STABLE_BUILD=false?
> USE_SNAPSHOTS=false
>
>> sudo ./dorsal.sh
I wouldn't recommend to use sudo. It is better to install in a
directory where you have write permission without using sudo.
>
>
> Now the error:
>
> In file included from /usr/local/include/Teuchos_CommHelpers.hpp:58:0,
> from /usr/local/include/trilinos/Tpetra_ConfigDefs.hpp:137,
> from /usr/local/include/trilinos/Epetra_TsqrAdaptor.hpp:59,
> from /usr/local/include/trilinos/BelosEpetraAdapter.hpp:76,
> from
> /home/paradox/tmpsoftware/src/dolfin/dolfin/la/TrilinosPreconditioner.cpp:34:
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp:182:46: error:
> expected template-name before ‘<’ token
> class MpiCommRequestBase : public CommRequest<OrdinalType> {
> ^
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp:182:46: error:
> expected ‘{’ before ‘<’ token
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp:182:46: error:
> expected unqualified-id before ‘<’ token
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp:538:15: error:
> ‘Teuchos::CommRequest’ is not a template
> virtual RCP<CommRequest<Ordinal> > isend(
> ^
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp:543:15: error:
> ‘Teuchos::CommRequest’ is not a template
> virtual RCP<CommRequest<Ordinal> >
> ^
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp:548:15: error:
> ‘Teuchos::CommRequest’ is not a template
> virtual RCP<CommRequest<Ordinal> > ireceive(
> ^
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp:553:15: error:
> ‘Teuchos::CommRequest’ is not a template
> virtual RCP<CommRequest<Ordinal> >
> ^
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp:559:25: error:
> ‘Teuchos::CommRequest’ is not a template
> const ArrayView<RCP<CommRequest<Ordinal> > > &requests
> ^
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp:563:32: error:
> ‘Teuchos::CommRequest’ is not a template
> waitAll (const ArrayView<RCP<CommRequest<Ordinal> > >& requests,
> ^
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp:567:23: error:
> ‘Teuchos::CommRequest’ is not a template
> wait (const Ptr<RCP<CommRequest<Ordinal> > >& request) const;
> ^
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp:1195:5: error:
> ‘Teuchos::CommRequest’ is not a template
> RCP<CommRequest<Ordinal> >
> ^
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp:1216:5: error:
> ‘Teuchos::CommRequest’ is not a template
> RCP<CommRequest<Ordinal> >
> ^
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp:1239:5: error:
> ‘Teuchos::CommRequest’ is not a template
> RCP<CommRequest<Ordinal> >
> ^
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp:1262:5: error:
> ‘Teuchos::CommRequest’ is not a template
> RCP<CommRequest<Ordinal> >
> ^
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp:1289:36: error:
> ‘Teuchos::CommRequest’ is not a template
> waitAllImpl (const ArrayView<RCP<CommRequest<Ordinal> > >& requests,
> ^
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp: In function ‘void
> Teuchos::{anonymous}::waitAllImpl(const
> Teuchos::ArrayView<Teuchos::RCP<Teuchos::CommRequest> >&, const
> Teuchos::ArrayView<ompi_status_public_t>&)’:
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp:1292:36: error:
> ‘Teuchos::CommRequest’ is not a template
> typedef typename ArrayView<RCP<CommRequest<Ordinal> > >::size_type
> size_type;
> ^
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp:1315:11: error:
> ‘Teuchos::CommRequest’ is not a template
> RCP<CommRequest<Ordinal> > request = requests[i];
> ^
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp: At global scope:
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp:1422:36: error:
> ‘Teuchos::CommRequest’ is not a template
> waitAllImpl (const ArrayView<RCP<CommRequest<Ordinal> > >& requests)
> ^
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp: In function ‘void
> Teuchos::{anonymous}::waitAllImpl(const
> Teuchos::ArrayView<Teuchos::RCP<Teuchos::CommRequest> >&)’:
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp:1424:36: error:
> ‘Teuchos::CommRequest’ is not a template
> typedef typename ArrayView<RCP<CommRequest<Ordinal> > >::size_type
> size_type;
> ^
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp:1441:11: error:
> ‘Teuchos::CommRequest’ is not a template
> RCP<CommRequest<Ordinal> > request = requests[i];
> ^
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp: At global scope:
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp:1505:30: error:
> ‘Teuchos::CommRequest’ is not a template
> waitAll (const ArrayView<RCP<CommRequest<Ordinal> > >& requests) const
> ^
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp:1517:30: error:
> ‘Teuchos::CommRequest’ is not a template
> waitAll (const ArrayView<RCP<CommRequest<Ordinal> > >& requests,
> ^
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp: In member function
> ‘virtual void Teuchos::MpiComm<Ordinal>::waitAll(const
> Teuchos::ArrayView<Teuchos::RCP<Teuchos::CommRequest> >&, const
> Teuchos::ArrayView<Teuchos::RCP<Teuchos::CommStatus<Ordinal> > >&) const’:
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp:1522:34: error:
> ‘Teuchos::CommRequest’ is not a template
> typedef typename ArrayView<RCP<CommRequest<Ordinal> > >::size_type
> size_type;
> ^
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp: At global scope:
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp:1541:39: error:
> ‘Teuchos::CommRequest’ is not a template
> MpiComm<Ordinal>::wait (const Ptr<RCP<CommRequest<Ordinal> > >& request)
> const
> ^
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp: In member function
> ‘virtual Teuchos::RCP<Teuchos::CommStatus<Ordinal> >
> Teuchos::MpiComm<Ordinal>::wait(const
> Teuchos::Ptr<Teuchos::RCP<Teuchos::CommRequest> >&) const’:
> /usr/local/include/trilinos/Teuchos_DefaultMpiComm.hpp:1549:52: error:
> ‘class Teuchos::CommRequest’ has no member named ‘wait’
> RCP<CommStatus<Ordinal> > status = (*request)->wait ();
> ^
> In file included from
> /usr/local/include/trilinos/Tpetra_ConfigDefs.hpp:137:0,
> from /usr/local/include/trilinos/Epetra_TsqrAdaptor.hpp:59,
> from /usr/local/include/trilinos/BelosEpetraAdapter.hpp:76,
> from
> /home/paradox/tmpsoftware/src/dolfin/dolfin/la/TrilinosPreconditioner.cpp:34:
> /usr/local/include/Teuchos_CommHelpers.hpp: At global scope:
> /usr/local/include/Teuchos_CommHelpers.hpp:649:5: error:
> ‘Teuchos::CommRequest’ is not a template
> RCP<CommRequest<Ordinal> > isend(
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:657:5: error:
> ‘Teuchos::CommRequest’ is not a template
> RCP<CommRequest<Ordinal> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:668:5: error:
> ‘Teuchos::CommRequest’ is not a template
> RCP<CommRequest<Ordinal> > isend(
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:680:5: error:
> ‘Teuchos::CommRequest’ is not a template
> RCP<CommRequest<Ordinal> > isend(
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:701:5: error:
> ‘Teuchos::CommRequest’ is not a template
> RCP<CommRequest<Ordinal> > ireceive(
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:709:5: error:
> ‘Teuchos::CommRequest’ is not a template
> RCP<CommRequest<Ordinal> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:727:5: error:
> ‘Teuchos::CommRequest’ is not a template
> RCP<CommRequest<Ordinal> > ireceive(
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:739:5: error:
> ‘Teuchos::CommRequest’ is not a template
> RCP<CommRequest<Ordinal> > ireceive(
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:760:23: error:
> ‘Teuchos::CommRequest’ is not a template
> const ArrayView<RCP<CommRequest<Ordinal> > > &requests
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:795:30: error:
> ‘Teuchos::CommRequest’ is not a template
> const ArrayView<RCP<CommRequest<Ordinal> > >& requests,
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:823:48: error:
> ‘Teuchos::CommRequest’ is not a template
> wait (const Comm<Ordinal>& comm, const Ptr<RCP<CommRequest<Ordinal> > >&
> request);
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:1520:32: error:
> ‘Teuchos::CommRequest’ is not a template
> TEUCHOSCOMM_LIB_DLL_EXPORT RCP<CommRequest<int> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:1525:32: error:
> ‘Teuchos::CommRequest’ is not a template
> TEUCHOSCOMM_LIB_DLL_EXPORT RCP<CommRequest<int> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:1544:32: error:
> ‘Teuchos::CommRequest’ is not a template
> TEUCHOSCOMM_LIB_DLL_EXPORT RCP<CommRequest<int> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:1559:32: error:
> ‘Teuchos::CommRequest’ is not a template
> TEUCHOSCOMM_LIB_DLL_EXPORT RCP<CommRequest<int> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:1564:32: error:
> ‘Teuchos::CommRequest’ is not a template
> TEUCHOSCOMM_LIB_DLL_EXPORT RCP<CommRequest<int> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:1583:32: error:
> ‘Teuchos::CommRequest’ is not a template
> TEUCHOSCOMM_LIB_DLL_EXPORT RCP<CommRequest<int> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:1729:32: error:
> ‘Teuchos::CommRequest’ is not a template
> TEUCHOSCOMM_LIB_DLL_EXPORT RCP<CommRequest<int> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:1734:32: error:
> ‘Teuchos::CommRequest’ is not a template
> TEUCHOSCOMM_LIB_DLL_EXPORT RCP<CommRequest<int> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:1753:32: error:
> ‘Teuchos::CommRequest’ is not a template
> TEUCHOSCOMM_LIB_DLL_EXPORT RCP<CommRequest<int> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:1785:32: error:
> ‘Teuchos::CommRequest’ is not a template
> TEUCHOSCOMM_LIB_DLL_EXPORT RCP<CommRequest<int> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:1790:32: error:
> ‘Teuchos::CommRequest’ is not a template
> TEUCHOSCOMM_LIB_DLL_EXPORT RCP<CommRequest<int> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:1809:32: error:
> ‘Teuchos::CommRequest’ is not a template
> TEUCHOSCOMM_LIB_DLL_EXPORT RCP<CommRequest<int> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:1852:32: error:
> ‘Teuchos::CommRequest’ is not a template
> TEUCHOSCOMM_LIB_DLL_EXPORT RCP<CommRequest<int> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:1857:32: error:
> ‘Teuchos::CommRequest’ is not a template
> TEUCHOSCOMM_LIB_DLL_EXPORT RCP<CommRequest<int> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:1876:32: error:
> ‘Teuchos::CommRequest’ is not a template
> TEUCHOSCOMM_LIB_DLL_EXPORT RCP<CommRequest<int> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:1908:32: error:
> ‘Teuchos::CommRequest’ is not a template
> TEUCHOSCOMM_LIB_DLL_EXPORT RCP<CommRequest<int> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:1913:32: error:
> ‘Teuchos::CommRequest’ is not a template
> TEUCHOSCOMM_LIB_DLL_EXPORT RCP<CommRequest<int> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:1932:32: error:
> ‘Teuchos::CommRequest’ is not a template
> TEUCHOSCOMM_LIB_DLL_EXPORT RCP<CommRequest<int> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:1964:32: error:
> ‘Teuchos::CommRequest’ is not a template
> TEUCHOSCOMM_LIB_DLL_EXPORT RCP<CommRequest<int> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:1969:32: error:
> ‘Teuchos::CommRequest’ is not a template
> TEUCHOSCOMM_LIB_DLL_EXPORT RCP<CommRequest<int> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:1988:32: error:
> ‘Teuchos::CommRequest’ is not a template
> TEUCHOSCOMM_LIB_DLL_EXPORT RCP<CommRequest<int> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:2599:23: error:
> ‘Teuchos::CommRequest’ is not a template
> Teuchos::RCP<Teuchos::CommRequest<Ordinal> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp: In function
> ‘Teuchos::RCP<Teuchos::CommRequest> Teuchos::isend(const
> Teuchos::Comm<Ordinal>&, const Teuchos::ArrayRCP<const Packet>&, int)’:
> /usr/local/include/Teuchos_CommHelpers.hpp:2613:7: error:
> ‘Teuchos::CommRequest’ is not a template
> RCP<CommRequest<Ordinal> > commRequest = comm.isend(
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp: At global scope:
> /usr/local/include/Teuchos_CommHelpers.hpp:2620:23: error:
> ‘Teuchos::CommRequest’ is not a template
> Teuchos::RCP<Teuchos::CommRequest<Ordinal> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp: In function
> ‘Teuchos::RCP<Teuchos::CommRequest> Teuchos::isend(const
> Teuchos::ArrayRCP<const Packet>&, int, int, const Teuchos::Comm<Ordinal>&)’:
> /usr/local/include/Teuchos_CommHelpers.hpp:2631:7: error:
> ‘Teuchos::CommRequest’ is not a template
> RCP<CommRequest<Ordinal> > commRequest =
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp: At global scope:
> /usr/local/include/Teuchos_CommHelpers.hpp:2638:23: error:
> ‘Teuchos::CommRequest’ is not a template
> Teuchos::RCP<Teuchos::CommRequest<Ordinal> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:2653:23: error:
> ‘Teuchos::CommRequest’ is not a template
> Teuchos::RCP<Teuchos::CommRequest<Ordinal> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp: In function
> ‘Teuchos::RCP<Teuchos::CommRequest> Teuchos::isend(const
> Teuchos::Comm<Ordinal>&, const Serializer&, const Teuchos::ArrayRCP<const
> Packet>&, int)’:
> /usr/local/include/Teuchos_CommHelpers.hpp:2668:7: error:
> ‘Teuchos::CommRequest’ is not a template
> RCP<CommRequest<Ordinal> > commRequest = comm.isend(
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp: At global scope:
> /usr/local/include/Teuchos_CommHelpers.hpp:2675:23: error:
> ‘Teuchos::CommRequest’ is not a template
> Teuchos::RCP<Teuchos::CommRequest<Ordinal> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp: In function
> ‘Teuchos::RCP<Teuchos::CommRequest> Teuchos::ireceive(const
> Teuchos::Comm<Ordinal>&, const Teuchos::ArrayRCP<T2>&, int)’:
> /usr/local/include/Teuchos_CommHelpers.hpp:2686:7: error:
> ‘Teuchos::CommRequest’ is not a template
> RCP<CommRequest<Ordinal> > commRequest = comm.ireceive(
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp: At global scope:
> /usr/local/include/Teuchos_CommHelpers.hpp:2693:23: error:
> ‘Teuchos::CommRequest’ is not a template
> Teuchos::RCP<Teuchos::CommRequest<Ordinal> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp: In function
> ‘Teuchos::RCP<Teuchos::CommRequest> Teuchos::ireceive(const
> Teuchos::ArrayRCP<T2>&, int, int, const Teuchos::Comm<Ordinal>&)’:
> /usr/local/include/Teuchos_CommHelpers.hpp:2703:7: error:
> ‘Teuchos::CommRequest’ is not a template
> RCP<CommRequest<int> > commRequest =
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp: At global scope:
> /usr/local/include/Teuchos_CommHelpers.hpp:2710:23: error:
> ‘Teuchos::CommRequest’ is not a template
> Teuchos::RCP<Teuchos::CommRequest<Ordinal> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:2725:23: error:
> ‘Teuchos::CommRequest’ is not a template
> Teuchos::RCP<Teuchos::CommRequest<Ordinal> >
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp: In function
> ‘Teuchos::RCP<Teuchos::CommRequest> Teuchos::ireceive(const
> Teuchos::Comm<Ordinal>&, const Serializer&, const Teuchos::ArrayRCP<T2>&,
> int)’:
> /usr/local/include/Teuchos_CommHelpers.hpp:2740:7: error:
> ‘Teuchos::CommRequest’ is not a template
> RCP<CommRequest<Ordinal> > commRequest = comm.ireceive(
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp: At global scope:
> /usr/local/include/Teuchos_CommHelpers.hpp:2749:23: error:
> ‘Teuchos::CommRequest’ is not a template
> const ArrayView<RCP<CommRequest<Ordinal> > > &requests
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:2759:39: error:
> ‘Teuchos::CommRequest’ is not a template
> const ArrayView<RCP<CommRequest<Ordinal> > >& requests,
> ^
> /usr/local/include/Teuchos_CommHelpers.hpp:2769:30: error:
> ‘Teuchos::CommRequest’ is not a template
> const Ptr<RCP<CommRequest<Ordinal> > > &request)
> ^
> [ 48%] Building CXX object
> dolfin/CMakeFiles/dolfin.dir/la/EpetraLUSolver.cpp.o
> make[2]: *** [dolfin/CMakeFiles/dolfin.dir/la/TrilinosPreconditioner.cpp.o]
> Error 1
> make[2]: *** Waiting for unfinished jobs....
> make[2]: Leaving directory
> `/home/paradox/tmpsoftware/src/dolfin/dorsal_build_dir'
> make[1]: *** [dolfin/CMakeFiles/dolfin.dir/all] Error 2
> make[1]: Leaving directory
> `/home/paradox/tmpsoftware/src/dolfin/dorsal_build_dir'
> make: *** [all] Error 2
> make: Leaving directory
> `/home/paradox/tmpsoftware/src/dolfin/dorsal_build_dir'
> Failure with exit status: 2
> Exit message: There was a problem building dolfin.
Sorry, I don't know what to do about this Trilinos error.
Johannes
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