[Please keep fenics-support in Cc] On Tue, Oct 28, 2014 at 9:08 PM, André Timótheo <[email protected]> wrote: > Johannes, whats the correct last link for dowload of dorsal??
You can get the latest Dorsal from Bitbucket: https://bitbucket.org/fenics-project/dorsal > Sorry about it. It's me again... I acidentally lose my virtual machine > with dolfin compiled with tao solvers of petsc 3.5... > > When I download the last dorsal of bitbucket link > and follow the steps > > STABLE_BUILD=false and USE_SNAPSHOTS=false on > dorsal.cfg and > CONFOPTS="-DCMAKE_SKIP_RPATH: > BOOL=ON -DCGAL_DISABLE_ROUNDING_MATH_CHECK:BOOL=ON -DDOLFIN_ENABLE_TAO=true" > on dolfin.pkg > > don't work. There is a compilation error on dolfin. What is the compilation error? Johannes > > Do you know a link for a dorsal version that have compiled > the dorsal with the Tao Solvers on an ubbuntu 14 > (of osx parallels virtual machine)? I never had a problem > with scientific stuff of python on it... > > Thank you very very much for your atention. > > Andre Machado > > ---------- Forwarded message ---------- > From: Johannes Ring <[email protected]> > Date: 2014-10-09 17:34 GMT-03:00 > Subject: Re: dolfin Configuring incomplete, errors occurred! > To: André Timótheo <[email protected]> > Cc: FEniCS Project <[email protected]> > > > This looks like just a warning to me. > > The permission denied error you get when running make install is because it > tries to write to /usr. You probably want to install to a different > directory. Please see the following page for info about how to do that: > > http://fenicsproject.org/download/installation_from_source.html#installation-from-source > > Johannes > > On Oct 9, 2014 10:25 PM, "André Timótheo" <[email protected]> wrote: >> >> During make phase the error message: >> >> Linking CXX shared module _fem.so >> [100%] Built target _fem >> [100%] Swig source >> Scanning dependencies of target _common >> [100%] Building CXX object >> dolfin/swig/modules/common/CMakeFiles/_common.dir/modulePYTHON_wrap.cxx.o >> >> /home/parallels/dolfin-master/build/dolfin/swig/modules/common/modulePYTHON_wrap.cxx:2963:21: >> warning: invalid suffix on literal; C++11 requires a space between literal >> and identifier [-Wliteral-suffix] >> "in method '" name"', argument "argn" of type '"type"'" >> ^ >> >> /home/parallels/dolfin-master/build/dolfin/swig/modules/common/modulePYTHON_wrap.cxx:2963:39: >> warning: invalid suffix on literal; C++11 requires a space between literal >> and identifier [-Wliteral-suffix] >> "in method '" name"', argument "argn" of type '"type"'" >> ^ >> >> /home/parallels/dolfin-master/build/dolfin/swig/modules/common/modulePYTHON_wrap.cxx:2965:3: >> warning: invalid suffix on literal; C++11 requires a space between literal >> and identifier [-Wliteral-suffix] >> "invalid null reference "SWIG_ArgFail_Fmt(type, name, argn) >> ^ >> >> /home/parallels/dolfin-master/build/dolfin/swig/modules/common/modulePYTHON_wrap.cxx:2967:3: >> warning: invalid suffix on literal; C++11 requires a space between literal >> and identifier [-Wliteral-suffix] >> "in method '"name"', output value of type '"type"'" >> ^ >> >> /home/parallels/dolfin-master/build/dolfin/swig/modules/common/modulePYTHON_wrap.cxx:2967:20: >> warning: invalid suffix on literal; C++11 requires a space between literal >> and identifier [-Wliteral-suffix] >> "in method '"name"', output value of type '"type"'" >> ^ >> Linking CXX shared module _common.so >> >> >> 2014-10-09 13:57 GMT-03:00 André Timótheo <[email protected]>: >>> >>> I follow the instructions. >>> >>> cmake -DDOLFIN_ENABLE_CGAL:BOOL=OFF .. >>> make >>> make install >>> >>> After the make install another bug >>> >>> 100%] Built target _fem >>> [100%] Built target _common >>> Install the project... >>> -- Install configuration: "RelWithDebInfo" >>> -- Installing: /usr/lib/python2.7/dist-packages/dolfin >>> CMake Error at cmake_install.cmake:44 (FILE): >>> file INSTALL cannot set permissions on >>> "/usr/lib/python2.7/dist-packages/dolfin" >>> >>> >>> make: *** [install] Error 1 >>> >>> >>> 2014-10-09 3:33 GMT-03:00 Johannes Ring <[email protected]>: >>> >>>> In the build directory, run >>>> >>>> cmake -DDOLFIN_ENABLE_CGAL:BOOL=OFF .. >>>> make >>>> make install >>>> >>>> Johannes >>>> >>>> On Wed, Oct 8, 2014 at 11:45 PM, André Timótheo <[email protected]> >>>> wrote: >>>> > I have to put this comand - DDOLFIN_ENABLE_CGAL:BOOL=OFF >>>> > on make install? >>>> > >>>> > On [ 89%] Building CXX object >>>> > dolfin/CMakeFiles/dolfin.dir/generation/CSGCGALMeshGenerator3D.cpp. >>>> > there is >>>> > another bug: >>>> > >>>> > c++: internal compiler error: Killed (program cc1plus) >>>> > Please submit a full bug report, >>>> > with preprocessed source if appropriate. >>>> > See <file:///usr/share/doc/gcc-4.8/README.Bugs> for instructions. >>>> > make[2]: *** >>>> > [dolfin/CMakeFiles/dolfin.dir/generation/CSGCGALMeshGenerator3D.cpp.o] >>>> > Error >>>> > 4 >>>> > make[1]: *** [dolfin/CMakeFiles/dolfin.dir/all] Error 2 >>>> > make: *** [all] Error 2 >>>> > >>>> > 2014-10-08 12:51 GMT-03:00 Johannes Ring <[email protected]>: >>>> > >>>> >> Yes, you need more to compile with CGAL. To disable CGAL, run >>>> >> >>>> >> cmake - DDOLFIN_ENABLE_CGAL:BOOL=OFF.. >>>> >> >>>> >> Johannes >>>> >> >>>> >> On Oct 8, 2014 5:46 PM, "André Timótheo" <[email protected]> >>>> >> wrote: >>>> >>> >>>> >>> I put 3.5 gb of RAM in ubuntu 14 virtual machine inside os x. Do you >>>> >>> think that >>>> >>> I need more? >>>> >>> >>>> >>> Where I disable CGAL? >>>> >>> >>>> >>> Thank you very much man. >>>> >>> >>>> >>> A >>>> >>> >>>> >>> Em quarta-feira, 8 de outubro de 2014, Johannes Ring >>>> >>> <[email protected]> >>>> >>> escreveu: >>>> >>>> >>>> >>>> My guess is that you don't have enough memory to compile DOLFIN >>>> >>>> with >>>> >>>> CGAL support. You can disable CGAL with >>>> >>>> -DDOLFIN_ENABLE_CGAL:BOOL=OFF when >>>> >>>> running cmake. >>>> >>>> >>>> >>>> Johannes >>>> >>>> >>>> >>>> On Oct 8, 2014 5:35 PM, "André Timótheo" <[email protected]> >>>> >>>> wrote: >>>> >>>>> >>>> >>>>> I try the make install comand... >>>> >>>>> >>>> >>>>> c++: internal compiler error: Killed (program cc1plus) >>>> >>>>> Please submit a full bug report, >>>> >>>>> with preprocessed source if appropriate. >>>> >>>>> See <file:///usr/share/doc/gcc-4.8/README.Bugs> for instructions. >>>> >>>>> make[2]: *** >>>> >>>>> >>>> >>>>> [dolfin/CMakeFiles/dolfin.dir/generation/CSGCGALMeshGenerator3D.cpp.o] >>>> >>>>> Error >>>> >>>>> 4 >>>> >>>>> make[1]: *** [dolfin/CMakeFiles/dolfin.dir/all] Error 2 >>>> >>>>> make: *** [all] Error 2 >>>> >>>>> >>>> >>>>> How can I solve it? >>>> >>>>> >>>> >>>>> Andre Timotheo >>>> >>>>> >>>> >>>>> ---------- Forwarded message ---------- >>>> >>>>> From: André Timótheo <[email protected]> >>>> >>>>> Date: 2014-10-08 10:19 GMT-03:00 >>>> >>>>> Subject: Fwd: [FEniCS] dolfin Configuring incomplete, errors >>>> >>>>> occurred! >>>> >>>>> To: [email protected] >>>> >>>>> >>>> >>>>> >>>> >>>>> thank you very much! >>>> >>>>> >>>> >>>>> Andre Machado >>>> >>>>> >>>> >>>>> >>>> >>>>> Subject: Re: [FEniCS] dolfin Configuring incomplete, errors >>>> >>>>> occurred! >>>> >>>>> To: André Timótheo <[email protected]> >>>> >>>>> Cc: FEniCS Project <[email protected]> >>>> >>>>> >>>> >>>>> >>>> >>>>> >>>> >>>>> On Tue, Oct 7, 2014 at 11:48 PM, André Timótheo >>>> >>>>> <[email protected]> >>>> >>>>> wrote: >>>> >>>>> > I am trying to install Dolfin from >>>> >>>>> > https://github.com/FEniCS/dolfin >>>> >>>>> > and there are some problems: >>>> >>>>> > >>>> >>>>> > -- Copying demo and test data to build directory. >>>> >>>>> > -- ---------------------------------------------- >>>> >>>>> > CMake Error at CMakeLists.txt:898 (message): >>>> >>>>> > Copy demo data failed: >>>> >>>>> > >>>> >>>>> > Traceback (most recent call last): >>>> >>>>> > >>>> >>>>> > File >>>> >>>>> > >>>> >>>>> > >>>> >>>>> > "/home/parallels/Downloads/dolfin-master/cmake/scripts/copy-test-demo-data", >>>> >>>>> > line 70, in <module> >>>> >>>>> > copy_data(sys.argv[-1]) >>>> >>>>> > File >>>> >>>>> > >>>> >>>>> > >>>> >>>>> > "/home/parallels/Downloads/dolfin-master/cmake/scripts/copy-test-demo-data", >>>> >>>>> > line 47, in copy_data >>>> >>>>> > raise RuntimeError("destination directory cannot be the >>>> >>>>> > same as >>>> >>>>> > "\ >>>> >>>>> > >>>> >>>>> > RuntimeError: destination directory cannot be the same as the >>>> >>>>> > dolfin >>>> >>>>> > source >>>> >>>>> > directory >>>> >>>>> > >>>> >>>>> > -- Configuring incomplete, errors occurred! >>>> >>>>> >>>> >>>>> Create a build directory and run cmake in that directory. For >>>> >>>>> instance, in the DOLFIN source directory, do: >>>> >>>>> >>>> >>>>> mkdir build >>>> >>>>> cd build >>>> >>>>> cmake .. >>>> >>>>> >>>> >>>>> Johannes >>>> >>>>> >>>> >>>>> >>>> > >>> >>> >> > _______________________________________________ fenics-support mailing list [email protected] http://fenicsproject.org/mailman/listinfo/fenics-support
