the stacktrace:
gdb -ex r -ex bt -args python -c "from dolfin import *; import pylab as py"
[...]
Reading symbols from python...(no debugging symbols found)...done.
Starting program: /usr/bin/python -c from\ dolfin\ import\ \*\;\ import\
pylab\ as\ py
warning: Could not load shared library symbols for linux-vdso.so.1.
Do you need "set solib-search-path" or "set sysroot"?
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/usr/lib/libthread_db.so.1".
[New Thread 0x7fffb46df700 (LWP 732)]
Program received signal SIGSEGV, Segmentation fault.
0x00007ffff74df73a in __strcmp_sse2_unaligned () from /usr/lib/libc.so.6
#0 0x00007ffff74df73a in __strcmp_sse2_unaligned () from /usr/lib/libc.so.6
#1 0x00007fffa9ce009f in QMetaType::registerNormalizedType(QByteArray
const&, void (*)(void*), void* (*)(void const*), void (*)(void*), void*
(*)(void*, void const*), int, QFlags<QMetaType::TypeFlag>, QMetaObject
const*) ()
---Type <return> to continue, or q <return> to quit---
from /usr/lib/libQt5Core.so.5
#2 0x00007fffaa0e91e1 in ?? ()
from /usr/lib/python2.7/site-packages/PyQt5/QtCore.so
#3 0x00007fffaa0e9280 in ?? ()
from /usr/lib/python2.7/site-packages/PyQt5/QtCore.so
#4 0x00007fffaa0e8de1 in ?? ()
from /usr/lib/python2.7/site-packages/PyQt5/QtCore.so
#5 0x00007ffff7b03917 in _PyImport_LoadDynamicModule ()
from /usr/lib/libpython2.7.so.1.0
#6 0x00007ffff7b019b1 in import_submodule () from
/usr/lib/libpython2.7.so.1.0
#7 0x00007ffff7b01ed6 in ensure_fromlist () from
/usr/lib/libpython2.7.so.1.0
#8 0x00007ffff7b02725 in PyImport_ImportModuleLevel ()
from /usr/lib/libpython2.7.so.1.0
#9 0x00007ffff7ae7ea8 in builtin___import__ ()
from /usr/lib/libpython2.7.so.1.0
#10 0x00007ffff7a588c3 in PyObject_Call () from /usr/lib/libpython2.7.so.1.0
#11 0x00007ffff7ae9bb7 in PyEval_CallObjectWithKeywords ()
from /usr/lib/libpython2.7.so.1.0
#12 0x00007ffff7aecd78 in PyEval_EvalFrameEx ()
from /usr/lib/libpython2.7.so.1.0
#13 0x00007ffff7af0af0 in PyEval_EvalCodeEx ()
from /usr/lib/libpython2.7.so.1.0
#14 0x00007ffff7af0be9 in PyEval_EvalCode () from
/usr/lib/libpython2.7.so.1.0
---Type <return> to continue, or q <return> to quit---
#15 0x00007ffff7b00ac9 in PyImport_ExecCodeModuleEx ()
from /usr/lib/libpython2.7.so.1.0
#16 0x00007ffff7b00d43 in load_source_module ()
from /usr/lib/libpython2.7.so.1.0
#17 0x00007ffff7b019b1 in import_submodule () from
/usr/lib/libpython2.7.so.1.0
#18 0x00007ffff7b01c2f in load_next () from /usr/lib/libpython2.7.so.1.0
#19 0x00007ffff7b02648 in PyImport_ImportModuleLevel ()
from /usr/lib/libpython2.7.so.1.0
#20 0x00007ffff7ae7ea8 in builtin___import__ ()
from /usr/lib/libpython2.7.so.1.0
#21 0x00007ffff7a588c3 in PyObject_Call () from /usr/lib/libpython2.7.so.1.0
#22 0x00007ffff7ae9bb7 in PyEval_CallObjectWithKeywords ()
from /usr/lib/libpython2.7.so.1.0
#23 0x00007ffff7aecd78 in PyEval_EvalFrameEx ()
from /usr/lib/libpython2.7.so.1.0
#24 0x00007ffff7af0af0 in PyEval_EvalCodeEx ()
from /usr/lib/libpython2.7.so.1.0
#25 0x00007ffff7af0be9 in PyEval_EvalCode () from
/usr/lib/libpython2.7.so.1.0
#26 0x00007ffff7b00ac9 in PyImport_ExecCodeModuleEx ()
from /usr/lib/libpython2.7.so.1.0
#27 0x00007ffff7b00d43 in load_source_module ()
from /usr/lib/libpython2.7.so.1.0
#28 0x00007ffff7b019b1 in import_submodule () from
/usr/lib/libpython2.7.so.1.0
---Type <return> to continue, or q <return> to quit---
#29 0x00007ffff7b01c2f in load_next () from /usr/lib/libpython2.7.so.1.0
#30 0x00007ffff7b02648 in PyImport_ImportModuleLevel ()
from /usr/lib/libpython2.7.so.1.0
#31 0x00007ffff7ae7ea8 in builtin___import__ ()
from /usr/lib/libpython2.7.so.1.0
#32 0x00007ffff7a588c3 in PyObject_Call () from /usr/lib/libpython2.7.so.1.0
#33 0x00007ffff7ae9bb7 in PyEval_CallObjectWithKeywords ()
from /usr/lib/libpython2.7.so.1.0
#34 0x00007ffff7aecd78 in PyEval_EvalFrameEx ()
from /usr/lib/libpython2.7.so.1.0
#35 0x00007ffff7af0af0 in PyEval_EvalCodeEx ()
from /usr/lib/libpython2.7.so.1.0
#36 0x00007ffff7af0be9 in PyEval_EvalCode () from
/usr/lib/libpython2.7.so.1.0
#37 0x00007ffff7b00ac9 in PyImport_ExecCodeModuleEx ()
from /usr/lib/libpython2.7.so.1.0
#38 0x00007ffff7b00d43 in load_source_module ()
from /usr/lib/libpython2.7.so.1.0
#39 0x00007ffff7b019b1 in import_submodule () from
/usr/lib/libpython2.7.so.1.0
#40 0x00007ffff7b01c2f in load_next () from /usr/lib/libpython2.7.so.1.0
#41 0x00007ffff7b02648 in PyImport_ImportModuleLevel ()
from /usr/lib/libpython2.7.so.1.0
#42 0x00007ffff7ae7ea8 in builtin___import__ ()
from /usr/lib/libpython2.7.so.1.0
---Type <return> to continue, or q <return> to quit---
#43 0x00007ffff7a588c3 in PyObject_Call () from /usr/lib/libpython2.7.so.1.0
#44 0x00007ffff7ae9bb7 in PyEval_CallObjectWithKeywords ()
from /usr/lib/libpython2.7.so.1.0
#45 0x00007ffff7aecd78 in PyEval_EvalFrameEx ()
from /usr/lib/libpython2.7.so.1.0
#46 0x00007ffff7af0af0 in PyEval_EvalCodeEx ()
from /usr/lib/libpython2.7.so.1.0
#47 0x00007ffff7af0be9 in PyEval_EvalCode () from
/usr/lib/libpython2.7.so.1.0
#48 0x00007ffff7b00ac9 in PyImport_ExecCodeModuleEx ()
from /usr/lib/libpython2.7.so.1.0
#49 0x00007ffff7b00d43 in load_source_module ()
from /usr/lib/libpython2.7.so.1.0
#50 0x00007ffff7b019b1 in import_submodule () from
/usr/lib/libpython2.7.so.1.0
#51 0x00007ffff7b01c2f in load_next () from /usr/lib/libpython2.7.so.1.0
#52 0x00007ffff7b0260e in PyImport_ImportModuleLevel ()
from /usr/lib/libpython2.7.so.1.0
#53 0x00007ffff7ae7ea8 in builtin___import__ ()
from /usr/lib/libpython2.7.so.1.0
#54 0x00007ffff7a588c3 in PyObject_Call () from /usr/lib/libpython2.7.so.1.0
#55 0x00007ffff7ae9bb7 in PyEval_CallObjectWithKeywords ()
from /usr/lib/libpython2.7.so.1.0
#56 0x00007ffff7aecd78 in PyEval_EvalFrameEx ()
from /usr/lib/libpython2.7.so.1.0
---Type <return> to continue, or q <return> to quit---
#57 0x00007ffff7af0af0 in PyEval_EvalCodeEx ()
from /usr/lib/libpython2.7.so.1.0
#58 0x00007ffff7af0be9 in PyEval_EvalCode () from
/usr/lib/libpython2.7.so.1.0
#59 0x00007ffff7b00ac9 in PyImport_ExecCodeModuleEx ()
from /usr/lib/libpython2.7.so.1.0
#60 0x00007ffff7b00d43 in load_source_module ()
from /usr/lib/libpython2.7.so.1.0
#61 0x00007ffff7b019b1 in import_submodule () from
/usr/lib/libpython2.7.so.1.0
#62 0x00007ffff7b01c2f in load_next () from /usr/lib/libpython2.7.so.1.0
#63 0x00007ffff7b02648 in PyImport_ImportModuleLevel ()
from /usr/lib/libpython2.7.so.1.0
#64 0x00007ffff7ae7ea8 in builtin___import__ ()
from /usr/lib/libpython2.7.so.1.0
#65 0x00007ffff7aef7c4 in PyEval_EvalFrameEx ()
from /usr/lib/libpython2.7.so.1.0
#66 0x00007ffff7af0af0 in PyEval_EvalCodeEx ()
from /usr/lib/libpython2.7.so.1.0
#67 0x00007ffff7aeefe4 in PyEval_EvalFrameEx ()
from /usr/lib/libpython2.7.so.1.0
#68 0x00007ffff7af0af0 in PyEval_EvalCodeEx ()
from /usr/lib/libpython2.7.so.1.0
#69 0x00007ffff7af0be9 in PyEval_EvalCode () from
/usr/lib/libpython2.7.so.1.0
#70 0x00007ffff7b00ac9 in PyImport_ExecCodeModuleEx ()
---Type <return> to continue, or q <return> to quit---
from /usr/lib/libpython2.7.so.1.0
#71 0x00007ffff7b00d43 in load_source_module ()
from /usr/lib/libpython2.7.so.1.0
#72 0x00007ffff7b019b1 in import_submodule () from
/usr/lib/libpython2.7.so.1.0
#73 0x00007ffff7b01c2f in load_next () from /usr/lib/libpython2.7.so.1.0
#74 0x00007ffff7b02648 in PyImport_ImportModuleLevel ()
from /usr/lib/libpython2.7.so.1.0
#75 0x00007ffff7ae7ea8 in builtin___import__ ()
from /usr/lib/libpython2.7.so.1.0
#76 0x00007ffff7a588c3 in PyObject_Call () from /usr/lib/libpython2.7.so.1.0
#77 0x00007ffff7ae9bb7 in PyEval_CallObjectWithKeywords ()
from /usr/lib/libpython2.7.so.1.0
#78 0x00007ffff7aecd78 in PyEval_EvalFrameEx ()
from /usr/lib/libpython2.7.so.1.0
#79 0x00007ffff7af0af0 in PyEval_EvalCodeEx ()
from /usr/lib/libpython2.7.so.1.0
#80 0x00007ffff7af0be9 in PyEval_EvalCode () from
/usr/lib/libpython2.7.so.1.0
#81 0x00007ffff7b00ac9 in PyImport_ExecCodeModuleEx ()
from /usr/lib/libpython2.7.so.1.0
#82 0x00007ffff7b00d43 in load_source_module ()
from /usr/lib/libpython2.7.so.1.0
#83 0x00007ffff7b019b1 in import_submodule () from
/usr/lib/libpython2.7.so.1.0
#84 0x00007ffff7b01c2f in load_next () from /usr/lib/libpython2.7.so.1.0
---Type <return> to continue, or q <return> to quit---
#85 0x00007ffff7b02648 in PyImport_ImportModuleLevel ()
from /usr/lib/libpython2.7.so.1.0
#86 0x00007ffff7ae7ea8 in builtin___import__ ()
from /usr/lib/libpython2.7.so.1.0
#87 0x00007ffff7a588c3 in PyObject_Call () from /usr/lib/libpython2.7.so.1.0
#88 0x00007ffff7ae9bb7 in PyEval_CallObjectWithKeywords ()
from /usr/lib/libpython2.7.so.1.0
#89 0x00007ffff7aecd78 in PyEval_EvalFrameEx ()
from /usr/lib/libpython2.7.so.1.0
#90 0x00007ffff7af0af0 in PyEval_EvalCodeEx ()
from /usr/lib/libpython2.7.so.1.0
#91 0x00007ffff7af0be9 in PyEval_EvalCode () from
/usr/lib/libpython2.7.so.1.0
#92 0x00007ffff7b00ac9 in PyImport_ExecCodeModuleEx ()
from /usr/lib/libpython2.7.so.1.0
#93 0x00007ffff7b00d43 in load_source_module ()
from /usr/lib/libpython2.7.so.1.0
#94 0x00007ffff7b019b1 in import_submodule () from
/usr/lib/libpython2.7.so.1.0
#95 0x00007ffff7b01c2f in load_next () from /usr/lib/libpython2.7.so.1.0
#96 0x00007ffff7b0260e in PyImport_ImportModuleLevel ()
from /usr/lib/libpython2.7.so.1.0
#97 0x00007ffff7ae7ea8 in builtin___import__ ()
from /usr/lib/libpython2.7.so.1.0
#98 0x00007ffff7a588c3 in PyObject_Call () from /usr/lib/libpython2.7.so.1.0
---Type <return> to continue, or q <return> to quit---
#99 0x00007ffff7ae9bb7 in PyEval_CallObjectWithKeywords ()
from /usr/lib/libpython2.7.so.1.0
#100 0x00007ffff7aecd78 in PyEval_EvalFrameEx ()
from /usr/lib/libpython2.7.so.1.0
#101 0x00007ffff7af0af0 in PyEval_EvalCodeEx ()
from /usr/lib/libpython2.7.so.1.0
#102 0x00007ffff7af0be9 in PyEval_EvalCode () from
/usr/lib/libpython2.7.so.1.0
#103 0x00007ffff7b0a10f in run_mod () from /usr/lib/libpython2.7.so.1.0
#104 0x00007ffff7b0afd4 in PyRun_StringFlags ()
from /usr/lib/libpython2.7.so.1.0
#105 0x00007ffff7b0c8eb in PyRun_SimpleStringFlags ()
from /usr/lib/libpython2.7.so.1.0
#106 0x00007ffff7b1d528 in Py_Main () from /usr/lib/libpython2.7.so.1.0
#107 0x00007ffff746f040 in __libc_start_main () from /usr/lib/libc.so.6
#108 0x000000000040073e in _start ()
Steffen
On 01/15/15 09:30, Jan Blechta wrote:
On Wed, 14 Jan 2015 16:40:36 +0100
[email protected] wrote:
Hi,
tried to solve this problem that had ocurred to me before. When
loading dolfin and pylab at the same time I get a segmentation fault.
A run in gdb gives this:
gdb -ex r -args python -c"from dolfin import *; import pylab as py"
Please, enclose also stacktrace
gdb -ex r -ex bt -args python -c"from dolfin import *; import pylab as py"
Jan
[...]
Reading symbols from python...(no debugging symbols found)...done.
Starting program: /usr/bin/python -cfrom\ dolfin\ import\ \*\;\
import\ pylab\ as\ py
warning: Could not load shared library symbols for linux-vdso.so.1.
Do you need "set solib-search-path" or "set sysroot"?
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/usr/lib/libthread_db.so.1".
[New Thread 0x7fffb46df700 (LWP 2418)]
Program received signal SIGSEGV, Segmentation fault.
0x00007ffff74df9b2 in __strcmp_sse2_unaligned ()
from /usr/lib/libc.so.6
My dolfin is self-compiled (version 1.4.0+), python is of version 2.7
and the matplotlib is 1.4.2.
Do you have any idea what could cause this problem?
Thank you already in advance,
Steffen
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fenics-support mailing list
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http://fenicsproject.org/mailman/listinfo/fenics-support
