Thank you for helping me further. When trying to build ffc from your
repository, this is what I get:
===== testing package: ffc-1.4.0-py27_9 =====
> import: u'ffc'
> Traceback (most recent call last):
> File "<INSTALL_PATH>/anaconda/conda-bld/test-tmp_dir/run_test.py", line
> 25, in <module>
> import ffc
> File
> "<INSTALL_PATH>/anaconda/envs/_test/lib/python2.7/site-packages/ffc/__init__.py",
> line 18, in <module>
> from ffc.compiler import compile_form, compile_element
> File
> "<INSTALL_PATH>/anaconda/envs/_test/lib/python2.7/site-packages/ffc/compiler.py",
> line 127, in <module>
> from ffc.analysis import analyze_forms, analyze_elements
> File
> "<INSTALL_PATH>/anaconda/envs/_test/lib/python2.7/site-packages/ffc/analysis.py",
> line 42, in <module>
> from ffc.quadratureelement import default_quadrature_degree
> File
> "<INSTALL_PATH>/anaconda/envs/_test/lib/python2.7/site-packages/ffc/quadratureelement.py",
> line 138, in <module>
> from ffc.fiatinterface import reference_cell
> File
> "<INSTALL_PATH>/anaconda/envs/_test/lib/python2.7/site-packages/ffc/fiatinterface.py",
> line 43, in <module>
> from ufl.geometry import cellname2dim
> ImportError: cannot import name cellname2dim
> TESTS FAILED: ffc-1.4.0-py27_9
>
Here is the full output when I try to run 'ffc' in a terminal, if it can be
of any use:
Traceback (most recent call last):
> File "<INSTALL_PATH>/anaconda/bin/ffc", line 46, in <module>
> from ffc.log import info
> File
> "<INSTALL_PATH>/anaconda/lib/python2.7/site-packages/ffc/__init__.py", line
> 21, in <module>
> from ffc.jitcompiler import jit
> File
> "<INSTALL_PATH>/anaconda/lib/python2.7/site-packages/ffc/jitcompiler.py",
> line 30, in <module>
> import ufc
> File
> "<INSTALL_PATH>/anaconda/lib/python2.7/site-packages/ufc/__init__.py", line
> 7, in <module>
> from .ufc import (cell,
> File "<INSTALL_PATH>/anaconda/lib/python2.7/site-packages/ufc/ufc.py",
> line 32, in <module>
> _ufc = swig_import_helper()
> File "<INSTALL_PATH>/anaconda/lib/python2.7/site-packages/ufc/ufc.py",
> line 28, in swig_import_helper
> _mod = imp.load_module('_ufc', fp, pathname, description)
> ImportError: /lib64/libc.so.6: version `GLIBC_2.14' not found (required by
> <INSTALL_PATH>/anaconda/lib/python2.7/site-packages/ufc/_ufc.so)
>
Anything else I can try?
Greetings,
Maarten
On 13 January 2015 at 17:14, Juan Luis Cano <[email protected]> wrote:
> Thanks Maarten! Somewhere in the Anaconda docs is stated that bash is a
> hard requirement: conda doesn't work with other shells.
>
> In theory you can try and build the packages yourself installing
> conda-build and using my conda-recipes fork, the juanlu001/fenics branch.
>
> https <https://github.com/juanlu001/conda-recipes>://
> <https://github.com/juanlu001/conda-recipes>github.com
> <https://github.com/juanlu001/conda-recipes>/juanlu001/conda-recipes
> <https://github.com/juanlu001/conda-recipes>
>
> For instance, to rebuild ffc:
>
> $ cd conda-recipes
> $ git checkout juanlu001/fenics
> $ conda build ffc --python 27
>
> It may complain that instant, scientificpython and such are not built or
> do not exist. You can either rebuild those for your system or try my
> uploaded versions, doing this in the first place:
>
> $ conda config --add channels juanlu001
>
> If you try and fail I can inspect what is the problem with the recipes and
> try to polish them so they work in a variety of systems. I can install a
> virtual CentOS 6.6 myself but not before this Sunday.
>
> If you don't have admin privileges some requirements may be impossible to
> meet, specially if you try to rebuild boost. In
> https://binstar.org/juanlu001/boost I listed the packages needed to build
> it, but these need to come from your native package manager (e.g. libicu,
> libbz2) since they are not available from conda. As a last resort, you can
> try
>
> $ conda install binstar
> $ binstar search -t conda libicu
>
> But I am away from my computer now so I cannot check this command myself.
>
> Best regards,
>
> Juan Luis
> 'source activate fenics27' worked as soon as I switched from the csh shell
> to bash.
>
> I did an update with 'conda update conda' and 'conda update anaconda'
> before trying again. This time the installer ran without any problems.
>
> Trying 'import dolfin' now returns:
>
> ---------------------------------------------------
>> DOLFIN runtime dependency is not met.
>> Install the following python module: 'ffc'
>> and make sure its location is listed in PYTHONPATH.
>> ---------------------------------------------------
>>
>
> ffc installed just fine along with the other packages, and it is located
> in PYTHONPATH. Simply trying 'ffc' in the shell reveals this error:
>
> ImportError: /lib64/libc.so.6: version `GLIBC_2.14' not found (required by
>> <INSTALL_PATH>/anaconda/lib/python2.7/site-packages/ufc/_ufc.so)
>>
>
> I doubt this is related to conda. However, being stuck to GLIBC_2.12 on
> CentOS and without admin rights, I am not sure if there is anything I can
> further do?
>
> Thanks,
>
> Maarten
>
> On 12 January 2015 at 17:06, Juan Luis Cano <[email protected]> wrote:
>
>> Hello Maarten, thanks for trying it out! Failing that early must have
>> been very unimpressive though :)
>>
>> The 'source activate fenics27' should definitely work, assuming you are
>> in Linux and that the paths are correct. Would you please post to some
>> pastebin the output of 'conda info --all'?
>>
>> Also, I am not sure about the other error but maybe some requirements are
>> not met. I only compiled the package for python 2.7 and Linux 64bit, so you
>> need to activate your environment and to be in this platform.
>>
>> Juan Luis
>> On Jan 12, 2015 2:26 PM, "Maarten" <[email protected]> wrote:
>>
>>> Hello,
>>>
>>> Since we use the Anaconda Python distribution here, being able to
>>> install FEniCS using conda would be a great help!
>>> I'll just post whatever error I encounter, starting with:
>>>
>>> conda install fenics --channel juanlu001
>>>> Error: No packages found matching: dolfin ==1.4
>>>>
>>>
>>> That is, only running the third command. When I also run the first two,
>>> I get
>>>
>>> source activate fenics27
>>>> activate: No such file or directory.
>>>>
>>>
>>> Any further help would be much appreciated,
>>>
>>> Maarten
>>>
>>> On 9 January 2015 at 20:13, Juan Luis Cano <[email protected]> wrote:
>>>
>>>> Hello,
>>>>>
>>>>> I would very much like to try out FEniCS, but installing is not as
>>>>> easy as
>>>>> hoped. I am on a CentOS 6.6 system without root-rights, and tried to
>>>>> use
>>>>> the dorsal script to install locally. I copied the 'local.platform'
>>>>> file
>>>>> for 'Red Hat Enterprise Linux 6/CentOS 6/Scientific Linux 6' and
>>>>> encountered following problems when compiling dolfin:
>>>>>
>>>>
>>>> Hello,
>>>>
>>>> If you are willing to use the Anaconda Python distribution (or their
>>>> Miniconda installer), there is another experiment you can try:
>>>>
>>>> $ conda create --name fenics27 python=2.7
>>>> $ source activate fenics27
>>>> (fenics27) $ conda install fenics --channel juanlu001
>>>>
>>>> See http://fenicsproject.org/pipermail/fenics-support/2015-
>>>> January/001090.html for recent discussion about this in the mailing
>>>> list. I am willing to help you make it work on CentOS.
>>>>
>>>> Regards,
>>>>
>>>> Juan Luis Cano
>>>> _______________________________________________
>>>> fenics-support mailing list
>>>> [email protected]
>>>> http://fenicsproject.org/mailman/listinfo/fenics-support
>>>>
>>>
>>>
>
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