On Sat, 17 Jan 2015 04:13:21 -0600 Justin Chang <[email protected]> wrote:
> Hi all, > > Sorry if this is not the right mailing list to ask this, but I had the > system administrator on our University's research HPC system (running > on RHEL 6.6) install FEniCS (version 1.4.0). When I run just about any > problem, it gives me the following error: > > Calling FFC just-in-time (JIT) compiler, this may take some time. > Traceback (most recent call last): > File "vp2_np.py", line 32, in <module> > V = FunctionSpace(mesh, 'Lagrange', degree) > File "/project/cacds/apps/fenics/1. > 4.0-gcc/lib/python2.7/site-packages/dolfin/ > functions/functionspace.py", line 468, in __init__ > FunctionSpaceBase.__init__(self, mesh, element, > constrained_domain) File > "/project/cacds/apps/fenics/1.4.0-gcc/lib/python2.7/site-packages/dolfin/functions/functionspace.py", > line 153, in __init__ > ufc_element, ufc_dofmap = jit(self._ufl_element, > mpi_comm=mesh.mpi_comm()) > File > "/project/cacds/apps/fenics/1.4.0-gcc/lib/python2.7/site-packages/dolfin/compilemod > ules/jit.py", line 68, in mpi_jit > output = local_jit(*args, **kwargs) > File > "/project/cacds/apps/fenics/1.4.0-gcc/lib/python2.7/site-packages/dolfin/compilemodules/jit.py", > line 128, in jit > return form_compiler.jit(form, parameters=p) > File > "/project/cacds/apps/fenics/1.4.0-gcc/lib/python2.7/site-packages/ffc/jitcompiler.py", > line 72, in jit > return jit_element(ufl_object, parameters) > File > "/project/cacds/apps/fenics/1.4.0-gcc/lib/python2.7/site-packages/ffc/jitcompiler.py", > line 177, in jit_element > compiled_form, module, prefix = jit_form(form, parameters) > File > "/project/cacds/apps/fenics/1.4.0-gcc/lib/python2.7/site-packages/ffc/jitcompiler.py", > line 148, in jit_form > cache_dir = cache_dir) > File > "/project/cacds/apps/fenics/1.4.0-gcc/lib/python2.7/site-packages/ffc/backends/ufc/build.py", > line 73, in build_ufc_module > **kwargs) > Fi le > "/project/cacds/apps/fenics/1.4.0-gcc/lib/python2.7/site-packages/instant/build.py", > line 563, in build_module > recompile(modulename, module_path, new_compilation_checksum, > build_system) > File > "/project/cacds/apps/fenics/1.4.0-gcc/lib/python2.7/site-packages/instant/build.py", > line 144, in recompile > ret, output = get_status_output(cmd) Instant tries at this point to run cmake -DDEBUG=TRUE . in either instant cache dir or temp dir (I'm not sure which one). Is cmake available at runtime? Jan > File > "/project/cacds/apps/fenics/1.4.0-gcc/lib/python2.7/site-packages/instant/output.py", > line 120, in get_status_output > pipe = Popen(cmd, shell=False, cwd=cwd, env=env, stdout=PIPE, > stderr=STDOUT) > File > "/project/cacds/apps/fenics/1.4.0-gcc/lib/python2.7/subprocess.py", > line 710, in __init__ errread, errwrite) > File > "/project/cacds/apps/fenics/1.4.0-gcc/lib/python2.7/subprocess.py", > line 1335, in _execute_child raise child_exception > OSError: [Errno 2] No such file or directory > > > Does this have something to do with not having read/write/execute > privileges because FEniCS was installed at the administrative level? > Because the person who installed this was able to run everything > perfectly. > > Thanks, > Justin _______________________________________________ fenics-support mailing list [email protected] http://fenicsproject.org/mailman/listinfo/fenics-support
