On Tue, Mar 10, 2015 at 4:27 PM, moritz braun <[email protected]> wrote:
> Dear Johannes
>
> Now that I have arrived at home and had dinner here is
> the build.log attached!
This is the error:
2015/03/10 10:57:19 - INFO: [package:run_job]
/home/braunm/.hashdist/tmp/vtk-7y5tduwxoiyh/Rendering/vtkXRenderWindowInteractor.h:37:74:
fatal error: X11/StringDefs.h: No such file or directory
2015/03/10 10:57:19 - INFO: [package:run_job] #include
<X11/StringDefs.h> // Needed for X types in the public interface
2015/03/10 10:57:19 - INFO: [package:run_job]
^
2015/03/10 10:57:19 - INFO: [package:run_job] compilation terminated.
The X11 headers must be in place in order to build VTK on Linux [1].
On Ubuntu this file is available in the libxt-dev package but I'm not
sure which package you must install on Redhat.
> By the way, it would be awesome, if you could add a way to indicate via
> an environment variable to fenics-install.sh that vtk should not be build ,
> because on servers
> for number crunching it is not so essential.
You can use one of the profiles from the fenics-developer-tools
repository [2] and remove vtk from it. Then run "fenics-install.sh
<yourprofile.yaml>" to build without VTK.
[1] https://github.com/hashdist/hashstack/issues/634
[2]
https://bitbucket.org/fenics-project/fenics-developer-tools/src/93b0d179b3e7f97eb224a52f8af5cf6ee50e71cc/install/profiles/?at=master
Johannes
> I remember from googling this
> afternoon
> that with dorsal this was possible.
>
> regards
>
> Moritz
>
> On Tue, Mar 10, 2015 at 3:19 PM, Johannes Ring <[email protected]> wrote:
>>
>> [Please keep fenics-support in Cc]
>>
>> On Tue, Mar 10, 2015 at 1:17 PM, moritz braun <[email protected]>
>> wrote:
>> > Hi Johannes
>> >
>> >
>> > I have attached the CMakeError.log from the directory
>> > .hashdist/tmp/vtk-7y5tduwxoiyh/_build/CMakeFiles
>> >
>> > grepping on the file yields the following undefined references!
>> >
>> > CheckSymbolExists.c:(.text+0x1b): undefined reference to
>> > `pthread_create'
>> > CheckFunctionExists.c:(.text+0x15): undefined reference to `setsysinfo'
>> > CheckFunctionExists.c:(.text+0x15): undefined reference to `sigsetjmp'
>> > CheckFunctionExists.c:(.text+0x15): undefined reference to `_isinf'
>> >
>> >
>> > Maybe the file you want is a different one!
>>
>> Yes, I want the build.log from hashdist. When the script fails you
>> should see something like this:
>>
>> [vtk] Building vtk/dxyszop5gfft, follow log with:
>> [vtk] tail -f /home/johannr/.hashdist/tmp/vtk-dxyszop5gfft/build.log
>> [vtk|ERROR] Command '[u'/bin/bash', '_hashdist/build.sh']' returned
>> non-zero exit status 1
>> [vtk|ERROR] command failed (code=1); raising
>> Command exited with non-zero status 127
>>
>> The file I'm looking for will be available in
>> ~/.hashdist/tmp/vtk-<hash>/build.log.
>>
>> Johannes
>>
>> > I cannot be only one having this problem.
>> >
>> > vtk is a pain in a neck to get right.
>> >
>> > Thanks a lot!
>> >
>> > regards
>> >
>> > Moritz
>> >
>> >
>> > On Tue, Mar 10, 2015 at 1:46 PM, Johannes Ring <[email protected]>
>> > wrote:
>> >>
>> >> Hi Moritz,
>> >>
>> >> Can you post the build.log from vtk somewhere or attach it to this
>> >> thread?
>> >>
>> >> Johannes
>> >
>> >
>> >
>> >
>> > --
>> > Prof M Braun Tel.:27-12-4298006/8027
>> > Physics Department Fax.: 27-12-4293643
>> > University of South Africa (UNISA)
>> > [email protected]
>> > P.O. Box 392
>> > 0003
>> > UNISA
>> > South Africa
>> > http://moritz-braun.blogspot.com
>
>
>
>
> --
> Prof M Braun Tel.:27-12-4298006/8027
> Physics Department Fax.: 27-12-4293643
> University of South Africa (UNISA)
> [email protected]
> P.O. Box 392
> 0003
> UNISA
> South Africa
> http://moritz-braun.blogspot.com
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