With the comand export PROCS=1 and
run fenics-install.sh now I have (new) problems with
dolfin. I send the dolfin s build.log file...
[dolfin] tail -f
/home/parallels/.hashdist/tmp/dolfin-yaqbhnuup75j/build.log
[dolfin|ERROR] Command '[u'/bin/bash', '_hashdist/build.sh']' returned
non-zero exit status 1
[dolfin|ERROR] command failed (code=1); raising
Thank you
Andre Machado
2015-03-23 15:55 GMT-03:00 Andre Timotheo <[email protected]>:
> 4GB of phisical RAM.
>
> 5.5GB of memory for Ubuntu on
> Parallels
>
> I ll try the treads suggestion.
>
> Thank very much.
>
> A
>
> Enviado do meu iPhone
>
> > Em 23/03/2015, às 15:04, Johannes Ring <[email protected]> escreveu:
> >
> >> On Mon, Mar 23, 2015 at 6:12 PM, Andre Timotheo <[email protected]>
> wrote:
> >> Ubuntu 14 LST with Parallels 10 virtual machine on OS X Yosemite
> 10.10.2.
> >
> > How much memory is allocated for the virtual machine? You might need
> > to allocate more. You can also try to build in serial (default is to
> > build in parallel with 4 threads). Try to run
> >
> > export PROCS=1
> >
> > and then run the fenics-install.sh script again.
> >
> > Johannes
>
2015/03/23 20:33:03 - INFO: [package:source_cache] running: ['git', 'rev-list', '-n1', '--quiet', u'bf3e9790bac1bfa1b63b8426c9846914343bd90a']
2015/03/23 20:33:03 - INFO: [package:source_cache] running: ['git', 'rev-list', '-n1', '--quiet', u'bf3e9790bac1bfa1b63b8426c9846914343bd90a']
2015/03/23 20:33:03 - INFO: [package:source_cache] running: ['git', 'branch', u'tempmark/bf3e9790bac1bfa1b63b8426c9846914343bd90a', u'bf3e9790bac1bfa1b63b8426c9846914343bd90a']
2015/03/23 20:33:03 - INFO: [package:source_cache] running: ['git', 'init']
2015/03/23 20:33:03 - INFO: [package:source_cache] running: ['git', 'fetch', u'/home/parallels/.hashdist/src/git/dolfin', u'tempmark/bf3e9790bac1bfa1b63b8426c9846914343bd90a']
2015/03/23 20:33:15 - INFO: [package:source_cache] running: ['git', 'checkout', u'bf3e9790bac1bfa1b63b8426c9846914343bd90a']
2015/03/23 20:33:16 - INFO: [package:source_cache] running: ['git', 'branch', '-D', u'tempmark/bf3e9790bac1bfa1b63b8426c9846914343bd90a']
2015/03/23 20:33:16 - INFO: [package:run_job] running [u'/bin/bash', '_hashdist/build.sh']
2015/03/23 20:33:16 - INFO: [package:run_job] environment:
2015/03/23 20:33:16 - INFO: [package:run_job] {'ARTIFACT': u'/home/parallels/.hashdist/bld/dolfin/yaqbhnuup75j',
2015/03/23 20:33:16 - INFO: [package:run_job] 'BASH': u'/bin/bash',
2015/03/23 20:33:16 - INFO: [package:run_job] u'BLAS_DIR': u'/home/parallels/.hashdist/bld/blas/gdnhmas4n27e',
2015/03/23 20:33:16 - INFO: [package:run_job] u'BLAS_ID': u'blas/gdnhmas4n27e7ucssellqaeghi4kjojh',
2015/03/23 20:33:16 - INFO: [package:run_job] 'BLAS_LDFLAGS': u'-Wl,-rpath,/home/parallels/.hashdist/bld/openblas/2m4j6oz5vldj/lib -L/home/parallels/.hashdist/bld/openblas/2m4j6oz5vldj/lib -lopenblas',
2015/03/23 20:33:16 - INFO: [package:run_job] u'BOOST_DIR': u'/home/parallels/.hashdist/bld/boost/qfiyw3udonv5',
2015/03/23 20:33:16 - INFO: [package:run_job] u'BOOST_ID': u'boost/qfiyw3udonv5l6dozwfxbmg6oimgn4do',
2015/03/23 20:33:16 - INFO: [package:run_job] 'BOOST_MULTITHREADED': u'OFF',
2015/03/23 20:33:16 - INFO: [package:run_job] 'BUILD': u'/home/parallels/.hashdist/tmp/dolfin-yaqbhnuup75j',
2015/03/23 20:33:16 - INFO: [package:run_job] u'BZIP2_DIR': u'/home/parallels/.hashdist/bld/bzip2/yhn7t7sdxdfd',
2015/03/23 20:33:16 - INFO: [package:run_job] u'BZIP2_ID': u'bzip2/yhn7t7sdxdfdkhyie6hg36hqvgccj7rj',
2015/03/23 20:33:16 - INFO: [package:run_job] 'CMAKE': u'/home/parallels/.hashdist/bld/cmake/nanfm6dw2fzx/bin/cmake',
2015/03/23 20:33:16 - INFO: [package:run_job] u'CMAKE_DIR': u'/home/parallels/.hashdist/bld/cmake/nanfm6dw2fzx',
2015/03/23 20:33:16 - INFO: [package:run_job] u'CMAKE_ID': u'cmake/nanfm6dw2fzx4mpefrvu4aqx646bjnje',
2015/03/23 20:33:16 - INFO: [package:run_job] u'EIGEN_DIR': u'/home/parallels/.hashdist/bld/eigen/aoytfcoxhttj',
2015/03/23 20:33:16 - INFO: [package:run_job] u'EIGEN_ID': u'eigen/aoytfcoxhttjbkumsd7osk54bb2elcdg',
2015/03/23 20:33:16 - INFO: [package:run_job] u'FFC_DIR': u'/home/parallels/.hashdist/bld/ffc/rm3d6shdktxh',
2015/03/23 20:33:16 - INFO: [package:run_job] u'FFC_ID': u'ffc/rm3d6shdktxhurkwgj5i6ypg3ub3ylrk',
2015/03/23 20:33:16 - INFO: [package:run_job] u'FIAT_DIR': u'/home/parallels/.hashdist/bld/fiat/o5uzryvtrwax',
2015/03/23 20:33:16 - INFO: [package:run_job] u'FIAT_ID': u'fiat/o5uzryvtrwax53itqbmccy7lvsl7pduk',
2015/03/23 20:33:16 - INFO: [package:run_job] 'HASHDIST_CPU_COUNT': '1',
2015/03/23 20:33:16 - INFO: [package:run_job] u'HDF5_DIR': u'/home/parallels/.hashdist/bld/hdf5/lqym3um6gyxk',
2015/03/23 20:33:16 - INFO: [package:run_job] u'HDF5_ID': u'hdf5/lqym3um6gyxkl7jxuadhda2hgfzno72d',
2015/03/23 20:33:16 - INFO: [package:run_job] 'HDF5_ROOT': u'/home/parallels/.hashdist/bld/hdf5/lqym3um6gyxk',
2015/03/23 20:33:16 - INFO: [package:run_job] 'HDIST_CONFIG': '{"gc_roots":"/home/parallels/.hashdist/gcroots","build_stores":[{"dir":"/home/parallels/.hashdist/bld"}],"source_caches":[{"dir":"/home/parallels/.hashdist/src"}],"cache":"/home/parallels/.hashdist/cache","build_temp":"/home/parallels/.hashdist/tmp"}',
2015/03/23 20:33:16 - INFO: [package:run_job] 'HDIST_IMPORT': u'blas/gdnhmas4n27e7ucssellqaeghi4kjojh boost/qfiyw3udonv5l6dozwfxbmg6oimgn4do bzip2/yhn7t7sdxdfdkhyie6hg36hqvgccj7rj cmake/nanfm6dw2fzx4mpefrvu4aqx646bjnje eigen/aoytfcoxhttjbkumsd7osk54bb2elcdg ffc/rm3d6shdktxhurkwgj5i6ypg3ub3ylrk fiat/o5uzryvtrwax53itqbmccy7lvsl7pduk hdf5/lqym3um6gyxkl7jxuadhda2hgfzno72d instant/dxyszop5gfftjvenvukqk6cqu5mfpqve libxml2/mlk7x2dhjiudazomyarjl2rfvh6yjlpd mpi/hbd47qrzmwyecvdbonfalbn5xtqurzi3 numpy/evzjhcqfff5kugilrz5rwirhdfqe2x6l openblas/2m4j6oz5vldjal2zrvrzljakmqlew2ne parmetis/swux5owl6onc4tdenw3nzjzqyesf5cgh patchelf/k3rloj265ogtl4dmmmbmyt34dnffryka petsc/r7umjxehulyjc4q4ywsdgwukiocn2ksv petsc4py/cobdxzji2mz2jzu7deww3hat7rzymejm pkg-config/pjksilnbb4iyvrsemnzshe2d3o7uwpa5 ply/5tplmp6sy4r2ivh5nuxga5oe4eycwx5y python/2cti5gezei2etpeuytq24rdigpdiaios scotch/vyqtwuifsjrybqt2s6lrh54t37alfgky six/p4sxnpfjfouppunxtyjjgn5obbs3cv5q slepc/pxh7keny6347dfpol6ildxdt5ldrgfk6 slepc4py/4theimlncecly2fxuugzbdygkbomgkwe suitesparse/wfhr2dth3mfbbb2buhbokc56ctmqgsz2 swig/tdbzm5j64kt7oui2tpogj3mxzj6tollf sympy/2yigzfnzyi7pj54a7l45wf32lyo63pb3 ufl/ypzvfsr2oiqocwgpcwqgf3qg7gw5unyo vtk/7y5tduwxoiyhgjxowfrk2x65ihnqkvli zlib/v6anirfvk2op7jkxyn2zeevk6lwivb63',
2015/03/23 20:33:16 - INFO: [package:run_job] 'HDIST_IMPORT_PATHS': u'/home/parallels/.hashdist/bld/blas/gdnhmas4n27e:/home/parallels/.hashdist/bld/boost/qfiyw3udonv5:/home/parallels/.hashdist/bld/bzip2/yhn7t7sdxdfd:/home/parallels/.hashdist/bld/cmake/nanfm6dw2fzx:/home/parallels/.hashdist/bld/eigen/aoytfcoxhttj:/home/parallels/.hashdist/bld/ffc/rm3d6shdktxh:/home/parallels/.hashdist/bld/fiat/o5uzryvtrwax:/home/parallels/.hashdist/bld/hdf5/lqym3um6gyxk:/home/parallels/.hashdist/bld/instant/dxyszop5gfft:/home/parallels/.hashdist/bld/libxml2/mlk7x2dhjiud:/home/parallels/.hashdist/bld/mpi/hbd47qrzmwye:/home/parallels/.hashdist/bld/numpy/evzjhcqfff5k:/home/parallels/.hashdist/bld/openblas/2m4j6oz5vldj:/home/parallels/.hashdist/bld/parmetis/swux5owl6onc:/home/parallels/.hashdist/bld/patchelf/k3rloj265ogt:/home/parallels/.hashdist/bld/petsc/r7umjxehulyj:/home/parallels/.hashdist/bld/petsc4py/cobdxzji2mz2:/home/parallels/.hashdist/bld/pkg-config/pjksilnbb4iy:/home/parallels/.hashdist/bld/ply/5tplmp6sy4r2:/home/parallels/.hashdist/bld/python/2cti5gezei2e:/home/parallels/.hashdist/bld/scotch/vyqtwuifsjry:/home/parallels/.hashdist/bld/six/p4sxnpfjfoup:/home/parallels/.hashdist/bld/slepc/pxh7keny6347:/home/parallels/.hashdist/bld/slepc4py/4theimlncecl:/home/parallels/.hashdist/bld/suitesparse/wfhr2dth3mfb:/home/parallels/.hashdist/bld/swig/tdbzm5j64kt7:/home/parallels/.hashdist/bld/sympy/2yigzfnzyi7p:/home/parallels/.hashdist/bld/ufl/ypzvfsr2oiqo:/home/parallels/.hashdist/bld/vtk/7y5tduwxoiyh:/home/parallels/.hashdist/bld/zlib/v6anirfvk2op',
2015/03/23 20:33:16 - INFO: [package:run_job] 'HDIST_VIRTUALS': '',
2015/03/23 20:33:16 - INFO: [package:run_job] u'INSTANT_DIR': u'/home/parallels/.hashdist/bld/instant/dxyszop5gfft',
2015/03/23 20:33:16 - INFO: [package:run_job] u'INSTANT_ID': u'instant/dxyszop5gfftjvenvukqk6cqu5mfpqve',
2015/03/23 20:33:16 - INFO: [package:run_job] 'LAPACK_LDFLAGS': u'-Wl,-rpath,/home/parallels/.hashdist/bld/openblas/2m4j6oz5vldj/lib -L/home/parallels/.hashdist/bld/openblas/2m4j6oz5vldj/lib -lopenblas',
2015/03/23 20:33:16 - INFO: [package:run_job] u'LIBXML2_DIR': u'/home/parallels/.hashdist/bld/libxml2/mlk7x2dhjiud',
2015/03/23 20:33:16 - INFO: [package:run_job] u'LIBXML2_ID': u'libxml2/mlk7x2dhjiudazomyarjl2rfvh6yjlpd',
2015/03/23 20:33:16 - INFO: [package:run_job] 'MPICC': u'/home/parallels/.hashdist/bld/mpi/hbd47qrzmwye/bin/mpicc',
2015/03/23 20:33:16 - INFO: [package:run_job] 'MPICXX': u'/home/parallels/.hashdist/bld/mpi/hbd47qrzmwye/bin/mpic++',
2015/03/23 20:33:16 - INFO: [package:run_job] 'MPIEXEC': u'/home/parallels/.hashdist/bld/mpi/hbd47qrzmwye/bin/mpiexec',
2015/03/23 20:33:16 - INFO: [package:run_job] 'MPIF77': u'/home/parallels/.hashdist/bld/mpi/hbd47qrzmwye/bin/mpif77',
2015/03/23 20:33:16 - INFO: [package:run_job] 'MPIF90': u'/home/parallels/.hashdist/bld/mpi/hbd47qrzmwye/bin/mpif90',
2015/03/23 20:33:16 - INFO: [package:run_job] u'MPI_DIR': u'/home/parallels/.hashdist/bld/mpi/hbd47qrzmwye',
2015/03/23 20:33:16 - INFO: [package:run_job] u'MPI_ID': u'mpi/hbd47qrzmwyecvdbonfalbn5xtqurzi3',
2015/03/23 20:33:16 - INFO: [package:run_job] u'NUMPY_DIR': u'/home/parallels/.hashdist/bld/numpy/evzjhcqfff5k',
2015/03/23 20:33:16 - INFO: [package:run_job] u'NUMPY_ID': u'numpy/evzjhcqfff5kugilrz5rwirhdfqe2x6l',
2015/03/23 20:33:16 - INFO: [package:run_job] u'OPENBLAS_DIR': u'/home/parallels/.hashdist/bld/openblas/2m4j6oz5vldj',
2015/03/23 20:33:16 - INFO: [package:run_job] u'OPENBLAS_ID': u'openblas/2m4j6oz5vldjal2zrvrzljakmqlew2ne',
2015/03/23 20:33:16 - INFO: [package:run_job] u'PARMETIS_DIR': u'/home/parallels/.hashdist/bld/parmetis/swux5owl6onc',
2015/03/23 20:33:16 - INFO: [package:run_job] u'PARMETIS_ID': u'parmetis/swux5owl6onc4tdenw3nzjzqyesf5cgh',
2015/03/23 20:33:16 - INFO: [package:run_job] 'PATCHELF': u'/home/parallels/.hashdist/bld/patchelf/k3rloj265ogt/bin/patchelf',
2015/03/23 20:33:16 - INFO: [package:run_job] u'PATCHELF_DIR': u'/home/parallels/.hashdist/bld/patchelf/k3rloj265ogt',
2015/03/23 20:33:16 - INFO: [package:run_job] u'PATCHELF_ID': u'patchelf/k3rloj265ogtl4dmmmbmyt34dnffryka',
2015/03/23 20:33:16 - INFO: [package:run_job] 'PATH': u'/home/parallels/.hashdist/bld/swig/tdbzm5j64kt7/bin:/home/parallels/.hashdist/bld/python/2cti5gezei2e/bin:/home/parallels/.hashdist/bld/pkg-config/pjksilnbb4iy/bin:/home/parallels/.hashdist/bld/parmetis/swux5owl6onc/bin:/home/parallels/.hashdist/bld/mpi/hbd47qrzmwye/bin:/home/parallels/.hashdist/bld/libxml2/mlk7x2dhjiud/bin:/home/parallels/.hashdist/bld/hdf5/lqym3um6gyxk/bin:/home/parallels/.hashdist/bld/ffc/rm3d6shdktxh/bin:/home/parallels/.hashdist/bld/cmake/nanfm6dw2fzx/bin:/usr/bin:/bin',
2015/03/23 20:33:16 - INFO: [package:run_job] u'PETSC4PY_DIR': u'/home/parallels/.hashdist/bld/petsc4py/cobdxzji2mz2',
2015/03/23 20:33:16 - INFO: [package:run_job] u'PETSC4PY_ID': u'petsc4py/cobdxzji2mz2jzu7deww3hat7rzymejm',
2015/03/23 20:33:16 - INFO: [package:run_job] u'PETSC_DIR': u'/home/parallels/.hashdist/bld/petsc/r7umjxehulyj',
2015/03/23 20:33:16 - INFO: [package:run_job] u'PETSC_ID': u'petsc/r7umjxehulyjc4q4ywsdgwukiocn2ksv',
2015/03/23 20:33:16 - INFO: [package:run_job] u'PKG_CONFIG_DIR': u'/home/parallels/.hashdist/bld/pkg-config/pjksilnbb4iy',
2015/03/23 20:33:16 - INFO: [package:run_job] 'PKG_CONFIG_EXECUTABLE': u'/home/parallels/.hashdist/bld/pkg-config/pjksilnbb4iy/bin/pkg-config',
2015/03/23 20:33:16 - INFO: [package:run_job] u'PKG_CONFIG_ID': u'pkg-config/pjksilnbb4iyvrsemnzshe2d3o7uwpa5',
2015/03/23 20:33:16 - INFO: [package:run_job] 'PKG_CONFIG_PATH': u'/home/parallels/.hashdist/bld/python/2cti5gezei2e/lib/pkgconfig:/home/parallels/.hashdist/bld/libxml2/mlk7x2dhjiud/lib/pkgconfig',
2015/03/23 20:33:16 - INFO: [package:run_job] u'PLY_DIR': u'/home/parallels/.hashdist/bld/ply/5tplmp6sy4r2',
2015/03/23 20:33:16 - INFO: [package:run_job] u'PLY_ID': u'ply/5tplmp6sy4r2ivh5nuxga5oe4eycwx5y',
2015/03/23 20:33:16 - INFO: [package:run_job] 'PWD': u'/home/parallels/.hashdist/tmp/dolfin-yaqbhnuup75j',
2015/03/23 20:33:16 - INFO: [package:run_job] 'PYTHON': u'/home/parallels/.hashdist/bld/python/2cti5gezei2e/bin/python',
2015/03/23 20:33:16 - INFO: [package:run_job] 'PYTHONPATH': u'/home/parallels/.hashdist/bld/vtk/7y5tduwxoiyh/lib/python2.7/site-packages:/home/parallels/.hashdist/bld/ufl/ypzvfsr2oiqo/lib/python2.7/site-packages:/home/parallels/.hashdist/bld/sympy/2yigzfnzyi7p/lib/python2.7/site-packages:/home/parallels/.hashdist/bld/slepc4py/4theimlncecl/lib/python2.7/site-packages:/home/parallels/.hashdist/bld/six/p4sxnpfjfoup/lib/python2.7/site-packages:/home/parallels/.hashdist/bld/ply/5tplmp6sy4r2/lib/python2.7/site-packages:/home/parallels/.hashdist/bld/petsc4py/cobdxzji2mz2/lib/python2.7/site-packages:/home/parallels/.hashdist/bld/numpy/evzjhcqfff5k/lib/python2.7/site-packages:/home/parallels/.hashdist/bld/instant/dxyszop5gfft/lib/python2.7/site-packages:/home/parallels/.hashdist/bld/fiat/o5uzryvtrwax/lib/python2.7/site-packages:/home/parallels/.hashdist/bld/ffc/rm3d6shdktxh/lib/python2.7/site-packages',
2015/03/23 20:33:16 - INFO: [package:run_job] u'PYTHON_DIR': u'/home/parallels/.hashdist/bld/python/2cti5gezei2e',
2015/03/23 20:33:16 - INFO: [package:run_job] u'PYTHON_ID': u'python/2cti5gezei2etpeuytq24rdigpdiaios',
2015/03/23 20:33:16 - INFO: [package:run_job] u'SCOTCH_DIR': u'/home/parallels/.hashdist/bld/scotch/vyqtwuifsjry',
2015/03/23 20:33:16 - INFO: [package:run_job] u'SCOTCH_ID': u'scotch/vyqtwuifsjrybqt2s6lrh54t37alfgky',
2015/03/23 20:33:16 - INFO: [package:run_job] u'SIX_DIR': u'/home/parallels/.hashdist/bld/six/p4sxnpfjfoup',
2015/03/23 20:33:16 - INFO: [package:run_job] u'SIX_ID': u'six/p4sxnpfjfouppunxtyjjgn5obbs3cv5q',
2015/03/23 20:33:16 - INFO: [package:run_job] u'SLEPC4PY_DIR': u'/home/parallels/.hashdist/bld/slepc4py/4theimlncecl',
2015/03/23 20:33:16 - INFO: [package:run_job] u'SLEPC4PY_ID': u'slepc4py/4theimlncecly2fxuugzbdygkbomgkwe',
2015/03/23 20:33:16 - INFO: [package:run_job] u'SLEPC_DIR': u'/home/parallels/.hashdist/bld/slepc/pxh7keny6347',
2015/03/23 20:33:16 - INFO: [package:run_job] u'SLEPC_ID': u'slepc/pxh7keny6347dfpol6ildxdt5ldrgfk6',
2015/03/23 20:33:16 - INFO: [package:run_job] u'SUITESPARSE_DIR': u'/home/parallels/.hashdist/bld/suitesparse/wfhr2dth3mfb',
2015/03/23 20:33:16 - INFO: [package:run_job] u'SUITESPARSE_ID': u'suitesparse/wfhr2dth3mfbbb2buhbokc56ctmqgsz2',
2015/03/23 20:33:16 - INFO: [package:run_job] u'SWIG_DIR': u'/home/parallels/.hashdist/bld/swig/tdbzm5j64kt7',
2015/03/23 20:33:16 - INFO: [package:run_job] 'SWIG_EXECUTABLE': u'/home/parallels/.hashdist/bld/swig/tdbzm5j64kt7/bin/swig',
2015/03/23 20:33:16 - INFO: [package:run_job] u'SWIG_ID': u'swig/tdbzm5j64kt7oui2tpogj3mxzj6tollf',
2015/03/23 20:33:16 - INFO: [package:run_job] u'SYMPY_DIR': u'/home/parallels/.hashdist/bld/sympy/2yigzfnzyi7p',
2015/03/23 20:33:16 - INFO: [package:run_job] u'SYMPY_ID': u'sympy/2yigzfnzyi7pj54a7l45wf32lyo63pb3',
2015/03/23 20:33:16 - INFO: [package:run_job] u'UFL_DIR': u'/home/parallels/.hashdist/bld/ufl/ypzvfsr2oiqo',
2015/03/23 20:33:16 - INFO: [package:run_job] u'UFL_ID': u'ufl/ypzvfsr2oiqocwgpcwqgf3qg7gw5unyo',
2015/03/23 20:33:16 - INFO: [package:run_job] u'VTK_DIR': u'/home/parallels/.hashdist/bld/vtk/7y5tduwxoiyh',
2015/03/23 20:33:16 - INFO: [package:run_job] u'VTK_ID': u'vtk/7y5tduwxoiyhgjxowfrk2x65ihnqkvli',
2015/03/23 20:33:16 - INFO: [package:run_job] u'ZLIB_DIR': u'/home/parallels/.hashdist/bld/zlib/v6anirfvk2op',
2015/03/23 20:33:16 - INFO: [package:run_job] u'ZLIB_ID': u'zlib/v6anirfvk2op7jkxyn2zeevk6lwivb63'}
2015/03/23 20:33:17 - INFO: [package:run_job] -- The C compiler identification is GNU 4.8.2
2015/03/23 20:33:17 - INFO: [package:run_job] -- The CXX compiler identification is GNU 4.8.2
2015/03/23 20:33:17 - INFO: [package:run_job] -- Check for working C compiler: /usr/bin/cc
2015/03/23 20:33:17 - INFO: [package:run_job] -- Check for working C compiler: /usr/bin/cc -- works
2015/03/23 20:33:17 - INFO: [package:run_job] -- Detecting C compiler ABI info
2015/03/23 20:33:17 - INFO: [package:run_job] -- Detecting C compiler ABI info - done
2015/03/23 20:33:18 - INFO: [package:run_job] -- Detecting C compile features
2015/03/23 20:33:18 - INFO: [package:run_job] -- Detecting C compile features - done
2015/03/23 20:33:18 - INFO: [package:run_job] -- Check for working CXX compiler: /usr/bin/c++
2015/03/23 20:33:19 - INFO: [package:run_job] -- Check for working CXX compiler: /usr/bin/c++ -- works
2015/03/23 20:33:19 - INFO: [package:run_job] -- Detecting CXX compiler ABI info
2015/03/23 20:33:19 - INFO: [package:run_job] -- Detecting CXX compiler ABI info - done
2015/03/23 20:33:19 - INFO: [package:run_job] -- Detecting CXX compile features
2015/03/23 20:33:20 - INFO: [package:run_job] -- Detecting CXX compile features - done
2015/03/23 20:33:20 - INFO: [package:run_job] -- Performing Test HAVE_PIPE
2015/03/23 20:33:20 - INFO: [package:run_job] -- Performing Test HAVE_PIPE - Success
2015/03/23 20:33:20 - INFO: [package:run_job] -- Performing Test HAVE_PEDANTIC
2015/03/23 20:33:20 - INFO: [package:run_job] -- Performing Test HAVE_PEDANTIC - Success
2015/03/23 20:33:20 - INFO: [package:run_job] -- Performing Test HAVE_STD_CPP11
2015/03/23 20:33:21 - INFO: [package:run_job] -- Performing Test HAVE_STD_CPP11 - Success
2015/03/23 20:33:21 - INFO: [package:run_job] -- Performing Test HAVE_DEBUG
2015/03/23 20:33:21 - INFO: [package:run_job] -- Performing Test HAVE_DEBUG - Success
2015/03/23 20:33:21 - INFO: [package:run_job] -- Performing Test HAVE_O2_OPTIMISATION
2015/03/23 20:33:21 - INFO: [package:run_job] -- Performing Test HAVE_O2_OPTIMISATION - Success
2015/03/23 20:33:23 - INFO: [package:run_job] -- The Fortran compiler identification is GNU
2015/03/23 20:33:23 - INFO: [package:run_job] -- Check for working Fortran compiler: /usr/bin/gfortran
2015/03/23 20:33:23 - INFO: [package:run_job] -- Check for working Fortran compiler: /usr/bin/gfortran -- works
2015/03/23 20:33:23 - INFO: [package:run_job] -- Detecting Fortran compiler ABI info
2015/03/23 20:33:24 - INFO: [package:run_job] -- Detecting Fortran compiler ABI info - done
2015/03/23 20:33:24 - INFO: [package:run_job] -- Checking whether /usr/bin/gfortran supports Fortran 90
2015/03/23 20:33:24 - INFO: [package:run_job] -- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
2015/03/23 20:33:24 - INFO: [package:run_job] -- Looking for sys/types.h
2015/03/23 20:33:24 - INFO: [package:run_job] -- Looking for sys/types.h - found
2015/03/23 20:33:24 - INFO: [package:run_job] -- Looking for stdint.h
2015/03/23 20:33:25 - INFO: [package:run_job] -- Looking for stdint.h - found
2015/03/23 20:33:25 - INFO: [package:run_job] -- Looking for stddef.h
2015/03/23 20:33:25 - INFO: [package:run_job] -- Looking for stddef.h - found
2015/03/23 20:33:25 - INFO: [package:run_job] -- Check size of size_t
2015/03/23 20:33:25 - INFO: [package:run_job] -- Check size of size_t - done
2015/03/23 20:33:26 - INFO: [package:run_job] -- Found MPI_C: /home/parallels/.hashdist/bld/mpi/hbd47qrzmwye/lib/libmpich.so;/home/parallels/.hashdist/bld/mpi/hbd47qrzmwye/lib/libopa.so;/home/parallels/.hashdist/bld/mpi/hbd47qrzmwye/lib/libmpl.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libpthread.so
2015/03/23 20:33:26 - INFO: [package:run_job] -- Found MPI_CXX: /home/parallels/.hashdist/bld/mpi/hbd47qrzmwye/lib/libmpichcxx.so;/home/parallels/.hashdist/bld/mpi/hbd47qrzmwye/lib/libmpich.so;/home/parallels/.hashdist/bld/mpi/hbd47qrzmwye/lib/libopa.so;/home/parallels/.hashdist/bld/mpi/hbd47qrzmwye/lib/libmpl.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libpthread.so
2015/03/23 20:33:27 - INFO: [package:run_job] -- Found MPI_Fortran: /home/parallels/.hashdist/bld/mpi/hbd47qrzmwye/lib/libmpichf90.so;/home/parallels/.hashdist/bld/mpi/hbd47qrzmwye/lib/libmpich.so;/home/parallels/.hashdist/bld/mpi/hbd47qrzmwye/lib/libopa.so;/home/parallels/.hashdist/bld/mpi/hbd47qrzmwye/lib/libmpl.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libpthread.so
2015/03/23 20:33:27 - INFO: [package:run_job] -- Try OpenMP C flag = [-fopenmp]
2015/03/23 20:33:27 - INFO: [package:run_job] -- Performing Test OpenMP_FLAG_DETECTED
2015/03/23 20:33:27 - INFO: [package:run_job] -- Performing Test OpenMP_FLAG_DETECTED - Success
2015/03/23 20:33:27 - INFO: [package:run_job] -- Try OpenMP CXX flag = [-fopenmp]
2015/03/23 20:33:27 - INFO: [package:run_job] -- Performing Test OpenMP_FLAG_DETECTED
2015/03/23 20:33:27 - INFO: [package:run_job] -- Performing Test OpenMP_FLAG_DETECTED - Success
2015/03/23 20:33:27 - INFO: [package:run_job] -- Try OpenMP Fortran flag = [-fopenmp]
2015/03/23 20:33:27 - INFO: [package:run_job] -- Performing Test OpenMP_FLAG_DETECTED
2015/03/23 20:33:28 - INFO: [package:run_job] -- Performing Test OpenMP_FLAG_DETECTED - Success
2015/03/23 20:33:28 - INFO: [package:run_job] -- Found OpenMP: -fopenmp
2015/03/23 20:33:28 - INFO: [package:run_job] -- Performing Test OPENMP_UINT_TEST_RUNS
2015/03/23 20:33:29 - INFO: [package:run_job] -- Performing Test OPENMP_UINT_TEST_RUNS - Success
2015/03/23 20:33:29 - INFO: [package:run_job] -- Boost version: 1.55.0
2015/03/23 20:33:29 - INFO: [package:run_job] -- Found the following Boost libraries:
2015/03/23 20:33:29 - INFO: [package:run_job] -- filesystem
2015/03/23 20:33:29 - INFO: [package:run_job] -- program_options
2015/03/23 20:33:29 - INFO: [package:run_job] -- system
2015/03/23 20:33:29 - INFO: [package:run_job] -- thread
2015/03/23 20:33:29 - INFO: [package:run_job] -- iostreams
2015/03/23 20:33:29 - INFO: [package:run_job] -- timer
2015/03/23 20:33:29 - INFO: [package:run_job] -- UFC version: 1.6.0dev
2015/03/23 20:33:30 - INFO: [package:run_job] -- Found PythonInterp: /home/parallels/.hashdist/bld/python/2cti5gezei2e/bin/python (found suitable version "2.7.8", minimum required is "2")
2015/03/23 20:33:31 - INFO: [package:run_job] -- NumPy header version 1.8.2 found
2015/03/23 20:33:31 - INFO: [package:run_job] -- Found PY_ply: /home/parallels/.hashdist/bld/ply/5tplmp6sy4r2/lib/python2.7/site-packages/ply
2015/03/23 20:33:31 - INFO: [package:run_job] -- Found SWIG: /home/parallels/.hashdist/bld/swig/tdbzm5j64kt7/bin/swig (found version "3.0.5")
2015/03/23 20:33:31 - INFO: [package:run_job] -- Checking for package 'PETSc'
2015/03/23 20:33:31 - INFO: [package:run_job] -- PETSC_DIR is /home/parallels/.hashdist/bld/petsc/r7umjxehulyj
2015/03/23 20:33:31 - INFO: [package:run_job] -- PETSC_ARCH is empty
2015/03/23 20:33:31 - INFO: [package:run_job] -- Found petscconf.h
2015/03/23 20:33:31 - INFO: [package:run_job] -- Include directory /home/parallels/.hashdist/bld/patchelf/k3rloj265ogt/include does not exist
2015/03/23 20:33:34 - INFO: [package:run_job] -- Performing test PETSC_TEST_RUNS - Success
2015/03/23 20:33:34 - INFO: [package:run_job] -- Performing Test PETSC_CUSP_FOUND
2015/03/23 20:33:35 - INFO: [package:run_job] -- Performing Test PETSC_CUSP_FOUND - Failed
2015/03/23 20:33:35 - INFO: [package:run_job] -- PETSc configured without Cusp support
2015/03/23 20:33:35 - INFO: [package:run_job] -- Check size of PetscInt
2015/03/23 20:33:35 - INFO: [package:run_job] -- Check size of PetscInt - done
2015/03/23 20:33:35 - INFO: [package:run_job] -- Found PETSc: /home/parallels/.hashdist/bld/petsc/r7umjxehulyj/lib/libpetsc.so (Required is at least version "3.3")
2015/03/23 20:33:35 - INFO: [package:run_job] -- Checking for package 'PETSc4Py'
2015/03/23 20:33:36 - INFO: [package:run_job] -- petsc4py version 3.5 found
2015/03/23 20:33:36 - INFO: [package:run_job] -- Found PETSc4py: /home/parallels/.hashdist/bld/petsc4py/cobdxzji2mz2/lib/python2.7/site-packages/petsc4py/include
2015/03/23 20:33:36 - INFO: [package:run_job] -- Checking for package 'SLEPc'
2015/03/23 20:33:36 - INFO: [package:run_job] -- SLEPC_DIR is /home/parallels/.hashdist/bld/slepc/pxh7keny6347
2015/03/23 20:33:38 - INFO: [package:run_job] -- Performing test SLEPC_TEST_RUNS - Success
2015/03/23 20:33:38 - INFO: [package:run_job] -- Found SLEPc: /home/parallels/.hashdist/bld/slepc/pxh7keny6347/lib/libslepc.so (Required is at least version "3.3")
2015/03/23 20:33:38 - INFO: [package:run_job] -- Checking for package 'SLEPc4Py'
2015/03/23 20:33:38 - INFO: [package:run_job] -- slepc4py version 3.5.1 found
2015/03/23 20:33:38 - INFO: [package:run_job] -- Found SLEPc4py: /home/parallels/.hashdist/bld/slepc4py/4theimlncecl/lib/python2.7/site-packages/slepc4py/include (Required is at least version "3.5.1")
2015/03/23 20:33:39 - INFO: [package:run_job] -- Performing Test PARMETIS_TEST_RUNS
2015/03/23 20:33:39 - INFO: [package:run_job] -- Performing Test PARMETIS_TEST_RUNS - Success
2015/03/23 20:33:39 - INFO: [package:run_job] -- Found ParMETIS: /home/parallels/.hashdist/bld/parmetis/swux5owl6onc/lib/libparmetis.so;/home/parallels/.hashdist/bld/parmetis/swux5owl6onc/lib/libmetis.so (Required is at least version "4.0.2")
2015/03/23 20:33:39 - INFO: [package:run_job] -- Checking for package 'SCOTCH-PT'
2015/03/23 20:33:40 - INFO: [package:run_job] -- Found SCOTCH (version 6.0.0)
2015/03/23 20:33:40 - INFO: [package:run_job] -- Performing test SCOTCH_TEST_RUNS
2015/03/23 20:33:42 - INFO: [package:run_job] -- Performing test SCOTCH_TEST_RUNS - Success
2015/03/23 20:33:42 - INFO: [package:run_job] -- Found SCOTCH: /home/parallels/.hashdist/bld/scotch/vyqtwuifsjry/lib/libptscotch.a;/home/parallels/.hashdist/bld/scotch/vyqtwuifsjry/lib/libscotch.a;/home/parallels/.hashdist/bld/scotch/vyqtwuifsjry/lib/libptscotcherr.a
2015/03/23 20:33:42 - INFO: [package:run_job] -- Checking for package 'AMD'
2015/03/23 20:33:42 - INFO: [package:run_job] -- Looking for include file pthread.h
2015/03/23 20:33:42 - INFO: [package:run_job] -- Looking for include file pthread.h - found
2015/03/23 20:33:42 - INFO: [package:run_job] -- Looking for pthread_create
2015/03/23 20:33:42 - INFO: [package:run_job] -- Looking for pthread_create - found
2015/03/23 20:33:42 - INFO: [package:run_job] -- Found Threads: TRUE
2015/03/23 20:33:42 - INFO: [package:run_job] -- Checking for package 'UMFPACK'
2015/03/23 20:33:42 - INFO: [package:run_job] -- Checking for package 'AMD'
2015/03/23 20:33:42 - INFO: [package:run_job] -- Checking for package 'CHOLMOD'
2015/03/23 20:33:42 - INFO: [package:run_job] -- Checking for package 'AMD'
2015/03/23 20:33:42 - INFO: [package:run_job] -- A library with BLAS API found.
2015/03/23 20:33:43 - INFO: [package:run_job] -- Performing Test CHOLMOD_TEST_RUNS
2015/03/23 20:33:44 - INFO: [package:run_job] -- Performing Test CHOLMOD_TEST_RUNS - Success
2015/03/23 20:33:44 - INFO: [package:run_job] -- Performing Test UMFPACK_TEST_RUNS
2015/03/23 20:33:45 - INFO: [package:run_job] -- Performing Test UMFPACK_TEST_RUNS - Success
2015/03/23 20:33:45 - INFO: [package:run_job] -- Checking for package 'CHOLMOD'
2015/03/23 20:33:45 - INFO: [package:run_job] -- Checking for package 'AMD'
2015/03/23 20:33:46 - INFO: [package:run_job] -- A library with BLAS API found.
2015/03/23 20:33:48 - INFO: [package:run_job] -- Found HDF5: /home/parallels/.hashdist/bld/hdf5/lqym3um6gyxk/lib/libhdf5.so;/home/parallels/.hashdist/bld/zlib/v6anirfvk2op/lib/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so
2015/03/23 20:33:48 - INFO: [package:run_job] -- Found ZLIB: /home/parallels/.hashdist/bld/zlib/v6anirfvk2op/lib/libz.so (found version "1.2.8")
2015/03/23 20:33:48 - INFO: [package:run_job] -- Found VTK: /home/parallels/.hashdist/bld/vtk/7y5tduwxoiyh/lib/vtk-5.10 (found version "5.10")
2015/03/23 20:33:48 - INFO: [package:run_job] --
2015/03/23 20:33:48 - INFO: [package:run_job] -- The following optional packages were found:
2015/03/23 20:33:48 - INFO: [package:run_job] -- -------------------------------------------
2015/03/23 20:33:48 - INFO: [package:run_job] -- (OK) OPENMP
2015/03/23 20:33:48 - INFO: [package:run_job] -- (OK) MPI
2015/03/23 20:33:48 - INFO: [package:run_job] -- (OK) PETSC
2015/03/23 20:33:48 - INFO: [package:run_job] -- (OK) PETSC4PY
2015/03/23 20:33:48 - INFO: [package:run_job] -- (OK) SLEPC
2015/03/23 20:33:48 - INFO: [package:run_job] -- (OK) SLEPC4PY
2015/03/23 20:33:48 - INFO: [package:run_job] -- (OK) UMFPACK
2015/03/23 20:33:48 - INFO: [package:run_job] -- (OK) CHOLMOD
2015/03/23 20:33:48 - INFO: [package:run_job] -- (OK) SCOTCH
2015/03/23 20:33:48 - INFO: [package:run_job] -- (OK) PARMETIS
2015/03/23 20:33:48 - INFO: [package:run_job] -- (OK) ZLIB
2015/03/23 20:33:48 - INFO: [package:run_job] -- (OK) PYTHON
2015/03/23 20:33:48 - INFO: [package:run_job] -- (OK) HDF5
2015/03/23 20:33:48 - INFO: [package:run_job] -- (OK) VTK
2015/03/23 20:33:48 - INFO: [package:run_job] --
2015/03/23 20:33:48 - INFO: [package:run_job] -- The following optional packages were not enabled:
2015/03/23 20:33:48 - INFO: [package:run_job] -- -------------------------------------------------
2015/03/23 20:33:48 - INFO: [package:run_job] -- (--) TRILINOS
2015/03/23 20:33:48 - INFO: [package:run_job] -- (--) PASTIX
2015/03/23 20:33:48 - INFO: [package:run_job] -- (--) SPHINX
2015/03/23 20:33:48 - INFO: [package:run_job] -- (--) QT
2015/03/23 20:33:48 - INFO: [package:run_job] --
2015/03/23 20:33:48 - INFO: [package:run_job] Traceback (most recent call last):
2015/03/23 20:33:48 - INFO: [package:run_job] File "<string>", line 1, in <module>
2015/03/23 20:33:48 - INFO: [package:run_job] File "/home/parallels/.hashdist/bld/ffc/rm3d6shdktxh/lib/python2.7/site-packages/ufc/__init__.py", line 7, in <module>
2015/03/23 20:33:48 - INFO: [package:run_job] from .ufc import (cell,
2015/03/23 20:33:48 - INFO: [package:run_job] ImportError: No module named ufc
2015/03/23 20:33:48 - INFO: [package:run_job] CMake Warning at dolfin/CMakeLists.txt:314 (message):
2015/03/23 20:33:48 - INFO: [package:run_job] Unable to import UFC. Install latest UFC or check that PYTHONPATH is set
2015/03/23 20:33:48 - INFO: [package:run_job] appropriately. Python will be disabled.
2015/03/23 20:33:48 - INFO: [package:run_job]
2015/03/23 20:33:48 - INFO: [package:run_job]
2015/03/23 20:33:48 - INFO: [package:run_job] --
2015/03/23 20:33:48 - INFO: [package:run_job] -- Generating form files in demo, test, bench and dolfin directories. May take some time...
2015/03/23 20:33:48 - INFO: [package:run_job] -- ----------------------------------------------------------------------------------------
2015/03/23 20:33:53 - INFO: [package:run_job] CMake Error at CMakeLists.txt:897 (message):
2015/03/23 20:33:53 - INFO: [package:run_job] Generation of form files failed:
2015/03/23 20:33:53 - INFO: [package:run_job]
2015/03/23 20:33:53 - INFO: [package:run_job] Traceback (most recent call last):
2015/03/23 20:33:53 - INFO: [package:run_job]
2015/03/23 20:33:53 - INFO: [package:run_job] File "/home/parallels/.hashdist/bld/ffc/rm3d6shdktxh/bin/ffc", line 49, in <module>
2015/03/23 20:33:53 - INFO: [package:run_job] from ffc.log import info
2015/03/23 20:33:53 - INFO: [package:run_job] File "/home/parallels/.hashdist/bld/ffc/rm3d6shdktxh/lib/python2.7/site-packages/ffc/__init__.py", line 21, in <module>
2015/03/23 20:33:53 - INFO: [package:run_job] from ffc.jitcompiler import jit
2015/03/23 20:33:53 - INFO: [package:run_job] File "/home/parallels/.hashdist/bld/ffc/rm3d6shdktxh/lib/python2.7/site-packages/ffc/jitcompiler.py", line 30, in <module>
2015/03/23 20:33:53 - INFO: [package:run_job] import ufc
2015/03/23 20:33:53 - INFO: [package:run_job] File "/home/parallels/.hashdist/bld/ffc/rm3d6shdktxh/lib/python2.7/site-packages/ufc/__init__.py", line 7, in <module>
2015/03/23 20:33:53 - INFO: [package:run_job] from .ufc import (cell,
2015/03/23 20:33:53 - INFO: [package:run_job]
2015/03/23 20:33:53 - INFO: [package:run_job] ImportError: No module named ufc
2015/03/23 20:33:53 - INFO: [package:run_job]
2015/03/23 20:33:53 - INFO: [package:run_job] Traceback (most recent call last):
2015/03/23 20:33:53 - INFO: [package:run_job]
2015/03/23 20:33:53 - INFO: [package:run_job] File "/home/parallels/.hashdist/tmp/dolfin-yaqbhnuup75j/cmake/scripts/generate-form-files", line 80, in <module>
2015/03/23 20:33:53 - INFO: [package:run_job] raise RuntimeError("Unable to compile form: %s/%s" % (root, f))
2015/03/23 20:33:53 - INFO: [package:run_job]
2015/03/23 20:33:53 - INFO: [package:run_job] RuntimeError: Unable to compile form: dolfin/ale/Poisson1D.ufl
2015/03/23 20:33:53 - INFO: [package:run_job]
2015/03/23 20:33:53 - INFO: [package:run_job]
2015/03/23 20:33:53 - INFO: [package:run_job]
2015/03/23 20:33:53 - INFO: [package:run_job] -- Configuring incomplete, errors occurred!
2015/03/23 20:33:53 - INFO: [package:run_job] See also "/home/parallels/.hashdist/tmp/dolfin-yaqbhnuup75j/_build/CMakeFiles/CMakeOutput.log".
2015/03/23 20:33:53 - INFO: [package:run_job] See also "/home/parallels/.hashdist/tmp/dolfin-yaqbhnuup75j/_build/CMakeFiles/CMakeError.log".
2015/03/23 20:33:53 - ERROR: [package:run_job] Command '[u'/bin/bash', '_hashdist/build.sh']' returned non-zero exit status 1
2015/03/23 20:33:53 - ERROR: [package:run_job] command failed (code=1); raising
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